View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19743_high_1 (Length: 438)
Name: NF19743_high_1
Description: NF19743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19743_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 6608822 - 6609080
Alignment:
| Q |
1 |
cttctagctgttggcttgcaagaagctccgggaaacaaaattgcaactatgctttcggcagctttgaatgaaagtcacacgtaagagttcatttgtttcc |
100 |
Q |
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| T |
6608822 |
cttctagctgttggcttgcaagaagctccgggaaacaaaattgcaactatgctttcggcagctttgaatgaaagtcacacgtaagagttcatttgtttcc |
6608921 |
T |
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| Q |
101 |
atcctaacattgaaaatcagaatcgataataagctct-aagtttgtccagttataagtatatatgtcaagatgttattctagtgcaggtgcaatagtgca |
199 |
Q |
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| T |
6608922 |
atcctaacattgaaaatcagaatcgataataagctctaaagtttgtccagttataagtatatatgtcaagatgttattctagtgcaggtgcaatagtgca |
6609021 |
T |
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| Q |
200 |
accatgattatgctctataatcaccctagaaaaataaaataacttttaaacttataaat |
258 |
Q |
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| T |
6609022 |
accatgattatgctctataatcaccctagaaaaataaaataacttttaaacttataaat |
6609080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 328 - 423
Target Start/End: Original strand, 6609078 - 6609171
Alignment:
| Q |
328 |
aatttctatatatgtactctataaatttctgtataaatttaacattttctagtagtaaattttttatagttttgctagagcaagtgtatgtgaact |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6609078 |
aatttctatatatgtactctataaatttctgtataaatttaacattttctagtagtaaattttt--tagttttgctagagcaagtgtatgtgaact |
6609171 |
T |
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