View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19743_low_2 (Length: 368)
Name: NF19743_low_2
Description: NF19743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19743_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 16 - 354
Target Start/End: Original strand, 24260093 - 24260421
Alignment:
| Q |
16 |
atgaagattttgtttggtcaattgaggttccactgtctggaaaattcatcattgatgttgatttccttgatttgaagattgcaggcccagatgtatatgc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24260093 |
atgaagattttgtttggtcaattgaggttccactgtctggaaaattcatcattgatgttgatttccttgatttgaagattgcaggcccagatgtatatgc |
24260192 |
T |
|
| Q |
116 |
tcaagacttatcttttattattattgattttctatgatattcactgcaaatgataatcatttagatacaattagaatgtgacagtatagctaaaatcaat |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24260193 |
tcaagacttatcttttattattattgattttctattatattcactgcaaatgataatcatttagatacaattagaatgtgacagtatagctaaaatcaat |
24260292 |
T |
|
| Q |
216 |
tttggggtagtaattggatttagtaatccccttttataatcatgagcatttaattaatt-ctatgttcataatcaccaatgatgaatcagaatgattagt |
314 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24260293 |
tttgggg-------------tagtaatccccttttataatcatgagcatttaattaattcctttgttcataatcaccaatgatgaatcagaatgattagt |
24260379 |
T |
|
| Q |
315 |
g--ataataggttatagtacatcaaacaggggaggtttcatt |
354 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24260380 |
gatataataggttatagtacatcaaacaggggaggtttcatt |
24260421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University