View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19744_high_1 (Length: 632)
Name: NF19744_high_1
Description: NF19744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19744_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 13 - 616
Target Start/End: Original strand, 7023287 - 7023895
Alignment:
| Q |
13 |
cagataggtggcagaagctagcaagggctgttggagggaagacagttgaggaagtgaaaaagcattatgagatgttagttgaagatttgaagcaaattga |
112 |
Q |
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| T |
7023287 |
cagataggtggcagaagctagcaagggctgttggagggaagacagttgaggaagtgaaaaggcattatgagatgttagttgaagatttgaagcaaattga |
7023386 |
T |
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| Q |
113 |
ggaaggtcatgttcctttgcccaaatacagaaatgctgcaacaattaaaggttacaattacagtgacgaagaacaaagg----taatttttactacttaa |
208 |
Q |
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| T |
7023387 |
ggaaggtcatgttcctttgcccaaatacagaaatgctgcaacaattaaaggttacaattacagtgacgaagaacaaaggtaattaatttttactacttaa |
7023486 |
T |
|
| Q |
209 |
tccttnnnnnnntattgtagatagacaaaatataatagtcattgaaaactcataaagagatagatgatgagtcagggtttgaaaccaggtcactttgttc |
308 |
Q |
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| T |
7023487 |
tccttaaaaaaatattgtagatagataaaatataatagtcattgaaaactcataaagagatagatgatgagtcagggtttgaaaccatgtcactttgttc |
7023586 |
T |
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| Q |
309 |
gtcttacttaatcgttattttgtcattagcaatcccttgcttatggttcaatctgacactattagataaaattaaattagcaataaaaatttaaagagag |
408 |
Q |
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| T |
7023587 |
atcttacttaatcgttattttgtcattagcaatcccttgcttatggttcaatctgacac--ttagataaaattaaattagcaataaaaatttaaagagag |
7023684 |
T |
|
| Q |
409 |
ataatatgaaatatgaatctattttttcactaaatttaattaggaaaattaaacgagaatttatagttttgtatatctaatttggtctataa---nnnnn |
505 |
Q |
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| T |
7023685 |
ataatatgaaatatgaatctattttttcactaaatttaattaggaaaattaaacgagaatttatagttttgtatatctaatttggtctataaattttttt |
7023784 |
T |
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| Q |
506 |
nnnnctgttaataaaaatctacattataatctagactatagttttatatcatttatgttcattttctatgtttcatctactcacaccacaaaggtacaac |
605 |
Q |
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| T |
7023785 |
ttttctgttaataaaaatctacattataatctagactatagttttatatcatttatgttcattttctatgtttcatctactcacaccacaaaggtacaac |
7023884 |
T |
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| Q |
606 |
aaccatttcac |
616 |
Q |
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| T |
7023885 |
aaccatttcac |
7023895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 52365424 - 52365486
Alignment:
| Q |
21 |
tggcagaagctagcaagggctgttggagggaagacagttgaggaagtgaaaaagcattatgag |
83 |
Q |
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| T |
52365424 |
tggcagaaggtggctagagctgtgggagggaagactgttgaagaagtgaaaaggcattatgag |
52365486 |
T |
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