View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19744_high_16 (Length: 386)
Name: NF19744_high_16
Description: NF19744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19744_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 222 - 372
Target Start/End: Complemental strand, 27572506 - 27572356
Alignment:
| Q |
222 |
ttacgaaatgttgattttgtgattcacactccttgtatataagtagaaaataatacaccaattgccatatgtaaaatgaattgattctttttcaaatgca |
321 |
Q |
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| T |
27572506 |
ttacgaaatgttgattttgtgattcacactccttgtatataagtagaaaataatacaccaattgccatatgtaaaatgaattgattctttttcaaatgca |
27572407 |
T |
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| Q |
322 |
tatattgcattatttcttatagaataatgttaatgattctcgtaaatgttg |
372 |
Q |
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| T |
27572406 |
tatattgcattattgcttatagaataatgttaatgattctcgtaaatgttg |
27572356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 27572558 - 27572504
Alignment:
| Q |
11 |
atgaatttggttgaaaaactttttccacgttaaaataacaaaaatatatacatta |
65 |
Q |
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| T |
27572558 |
atgaatttggttgaaaaactttttccacgttaaaataacaaaaatatatacatta |
27572504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 22396954 - 22397016
Alignment:
| Q |
10 |
gatgaatttggttgaaaaactttttccacgttaaaataacaaaaatatatacattataaatat |
72 |
Q |
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| T |
22396954 |
gatgatttttgttgaaaaactctttccgtattaaaataacaaaaatatatattttataaatat |
22397016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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