View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19744_high_28 (Length: 286)
Name: NF19744_high_28
Description: NF19744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19744_high_28 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 272
Target Start/End: Complemental strand, 16049680 - 16049425
Alignment:
| Q |
19 |
aaattgtactatagtaagttttctatgtcacttattattttattcatatgttcatgatattct--gttgagtatttttcacccttttccggatttttgat |
116 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||| |
|
|
| T |
16049680 |
aaattgtaccatagtaagttttctatgtcacttattattttattcatatgttcatgatattctatgttgagtatttttcacctttttccgggtttttgac |
16049581 |
T |
|
| Q |
117 |
tatgccattctattggatggtgtagacgtgcaagattgaggacgcgtgatcgtgagtactcaggaataacttgacgctttctcgctttttccttgtcttt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
16049580 |
tatgccattctattggatggtgtagacgtgcaagattgaggacgcgtgatcgtgagtactcaggaataacttgactctttctcgctttttgcttgtcttt |
16049481 |
T |
|
| Q |
217 |
ggagtctagttgtaggctctgatttaggacttcgtcgtgatttttgtttattttat |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16049480 |
ggagtctagttgtaggctctgatttaggacttcgtcgtgatttttgtttattttat |
16049425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 65 - 271
Target Start/End: Complemental strand, 16024737 - 16024527
Alignment:
| Q |
65 |
tatgttcatgatattct--gttgagtatttttcacccttttccggatttttgattatgccattctattggatggtgtagacgtgcaagattgaggacgcg |
162 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| | ||| | ||||||||||||||| ||||||||||||||| |||| |||||||| |
|
|
| T |
16024737 |
tatgttcatgatattctatgttgagtatttttcacccttttccaggtttcgggctatgccattctattgagtggtgtagacgtgcaggattaaggacgcg |
16024638 |
T |
|
| Q |
163 |
tgatcg--tgagtactcaggaataacttgacgctttctcgctttttccttgtctttggagtctagttgtaggctctgatttaggacttcgtcgtgatttt |
260 |
Q |
| |
|
|||||| ||||||||| ||||||||| ||||||||||| || ||| ||| |||||||||||||||||||| | |||||||||| | |||| ||||| |
|
|
| T |
16024637 |
tgatcgcgtgagtactcgggaataactcgacgctttctctctgtttgattgcctttggagtctagttgtaggaccagatttaggaccttgtcgggattta |
16024538 |
T |
|
| Q |
261 |
tgtttatttta |
271 |
Q |
| |
|
||||||||||| |
|
|
| T |
16024537 |
tgtttatttta |
16024527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 57 - 246
Target Start/End: Original strand, 12026729 - 12026922
Alignment:
| Q |
57 |
tttattcatatgttcatgatattct--gttgagtatttttcacccttttccggatttttgattatgccattctattggatggtgtagacgtgcaagattg |
154 |
Q |
| |
|
||||||| |||||||||||| |||| ||| | ||||| |||||||||||| | |||| | ||||||||||||||||| ||||||||||||||| || || |
|
|
| T |
12026729 |
tttattcgtatgttcatgattttctatgttaaatatttctcacccttttcccggttttcggttatgccattctattgggtggtgtagacgtgcaggaatg |
12026828 |
T |
|
| Q |
155 |
aggacgcgtgatc--gtgagtactcaggaataacttgacgctttctcgctttttccttgtctttggagtctagttgtaggctctgatttaggac |
246 |
Q |
| |
|
||||| ||||||| ||||||||||||| ||| |||||| || |||||||||| |||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
12026829 |
aggacacgtgatcgtgtgagtactcagggatagcttgacactccctcgctttttgcttgcttttggagtctagttgtagactctgatttaggac |
12026922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 169
Target Start/End: Complemental strand, 355044 - 354938
Alignment:
| Q |
65 |
tatgttcatgatattct--gttgagtatttttcacccttttccggatttttgattatgccattctattggatggtgtagacgtgcaagattgaggacgcg |
162 |
Q |
| |
|
|||||||||||| |||| ||||||||||| |||||||||| ||| ||| | ||||||||| |||| ||||||||||||||| ||||||||||||| |
|
|
| T |
355044 |
tatgttcatgattttctttgttgagtatttctcacccttttacgggtttccgccaatgccattcgtttgggtggtgtagacgtgcaggattgaggacgcg |
354945 |
T |
|
| Q |
163 |
tgatcgt |
169 |
Q |
| |
|
||||||| |
|
|
| T |
354944 |
tgatcgt |
354938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 259
Target Start/End: Original strand, 12319270 - 12319315
Alignment:
| Q |
214 |
tttggagtctagttgtaggctctgatttaggacttcgtcgtgattt |
259 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||| ||||| |
|
|
| T |
12319270 |
tttggagtctagttgtaggctctgatttaagatttcgtcgggattt |
12319315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 260
Target Start/End: Complemental strand, 11227180 - 11227001
Alignment:
| Q |
81 |
tgttgagtatttttcacccttttccggatttttgattatgccattctattggatggtgtagacgtgcaagattgaggacgcgtgatcgt---gagtactc |
177 |
Q |
| |
|
||||||||||||||||||||||| ||| ||| || |||| ||||||| |||||||||| | || |||||||||| ||||||||| |||||| | |
|
|
| T |
11227180 |
tgttgagtatttttcacccttttgcgggtttctgccaatgc---tctattgtgtggtgtagacatacaggattgaggactcgtgatcgtcgtgagtaccc |
11227084 |
T |
|
| Q |
178 |
aggaataacttgacgctttctcgctttt-tccttgtctttggagtctagttgtaggctctgatttaggacttcgtcgtgatttt |
260 |
Q |
| |
|
||| ||||| |||| ||| ||||| | |||| ||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
11227083 |
gaagatagcttgatgcttcctcacttttatgtttgt-tttggagtctagttgtaggctctgatttaggactttgtcgggatttt |
11227001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 117 - 242
Target Start/End: Original strand, 21509239 - 21509368
Alignment:
| Q |
117 |
tatgccattctattggatggtgtagacgtgcaagattgaggacgcgtgatc---gtgagtactcaggaataacttgacgctttctcgctttt-tccttgt |
212 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||| |||||||||| |||||||||| | ||| ||||| ||| || |||||| | |||| |
|
|
| T |
21509239 |
tatgccattctattgggtggtgtagacgtgcaggattgagaacgcgtgatcattgtgagtactcggagatagcttgatacttccttgcttttatgcttgc |
21509338 |
T |
|
| Q |
213 |
ctttggagtctagttgtaggctctgattta |
242 |
Q |
| |
|
|||||||||||| ||||||||| ||||| |
|
|
| T |
21509339 |
ttttggagtctagaagtaggctctaattta |
21509368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 240
Target Start/End: Original strand, 27609791 - 27609863
Alignment:
| Q |
169 |
tgagtactcaggaataacttgacgctttctcgctttt-tccttgtctttggagtctagttgtaggctctgatt |
240 |
Q |
| |
|
||||||| |||| ||| ||||| |||| ||| ||||| | |||| ||||||||||||||||||||||||||| |
|
|
| T |
27609791 |
tgagtacccagggatagcttgatgcttcctcacttttatgcttgcttttggagtctagttgtaggctctgatt |
27609863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 2286718 - 2286763
Alignment:
| Q |
116 |
ttatgccattctattggatggtgtagacgtgcaagattgaggacgc |
161 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||| |||||| ||||| |
|
|
| T |
2286718 |
ttatgccattttattgggtggtgtagacgtgcatgattgaagacgc |
2286763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University