View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19744_high_31 (Length: 257)
Name: NF19744_high_31
Description: NF19744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19744_high_31 |
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Alignment Details
Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 127 - 210
Target Start/End: Original strand, 28035142 - 28035225
Alignment:
| Q |
127 |
agtatatattaaatcaatggaatcctctggtacctcttgattgataaagttccaacctacttttggcttctggtaaaattgctt |
210 |
Q |
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| T |
28035142 |
agtatatattaaatcaatggaatcctctggtacctcttgattgataaagttccaacctacttttggcttctggtaaaattgctt |
28035225 |
T |
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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 28035031 - 28035072
Alignment:
| Q |
17 |
atgttatgcttaatctatacaaactacactcatgcaacactg |
58 |
Q |
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| T |
28035031 |
atgttatgcttaatctatacaaactacactcatgcaacactg |
28035072 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 197
Target Start/End: Complemental strand, 8758077 - 8758023
Alignment:
| Q |
143 |
atggaatcctctggtacctcttgattgataaagttccaacctacttttggcttct |
197 |
Q |
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| T |
8758077 |
atggaatcctcttgaacctctagactgataaagctccaacctactcttggcttct |
8758023 |
T |
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