View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19744_high_42 (Length: 242)
Name: NF19744_high_42
Description: NF19744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19744_high_42 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 31180292 - 31180513
Alignment:
| Q |
17 |
aagacaaccatttcattacgaacaccataacgacagttgtaaaatacaaatatcgaacctctgcaaatagactgcacaaagatagaggacttccgcagtg |
116 |
Q |
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| T |
31180292 |
aagacaaccatttcattacgaacaccataacgacagttgtaaaatacaaatatcgaacctctgcaaatagactgcacaaagatagaggacttccgcagtg |
31180391 |
T |
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| Q |
117 |
tagtatatgttttccgactaaaatgagttctagtatgcttttggataattgttgcagagttgctaagcatgtatgctctccgagcatccaattctgccat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31180392 |
tagtatatgttttccgactaaaatgagttctagtatgcttttggataattgttgcagagttgctaagcatgtatgctctcagagcatccaattctgccat |
31180491 |
T |
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| Q |
217 |
atgaccagctcttaggaatatt |
238 |
Q |
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|||||||||||||||||||||| |
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| T |
31180492 |
atgaccagctcttaggaatatt |
31180513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 31002823 - 31003037
Alignment:
| Q |
22 |
aaccatttcattacgaacaccataacgacagttgtaaaatacaaatatcgaacctctgcaaatagactgcacaaagatagaggacttccgcagtgtagta |
121 |
Q |
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|||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||| | |||||||||||||||||||||| |
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| T |
31002823 |
aaccatttcaatacgaacaccataaggacagttgtaaaatacaaatatctaacctctgcaaatagactgcaaaaacaaagaggacttccgcagtgtagta |
31002922 |
T |
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| Q |
122 |
tatgttttccgactaaaatgagttctagtatgcttttggataattgttgcagagttgctaagcatgtatgctctccgagcatccaattctgccatatgac |
221 |
Q |
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||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31002923 |
tatcttttctgactaaaatgagttctagtatgcttttggataattgttgcagagttgctaagcatgtatgctctccgagcatccaattctgccatatgac |
31003022 |
T |
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| Q |
222 |
cagctcttaggaata |
236 |
Q |
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||||||||||||||| |
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| T |
31003023 |
cagctcttaggaata |
31003037 |
T |
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