View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19744_high_51 (Length: 227)
Name: NF19744_high_51
Description: NF19744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19744_high_51 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 47746398 - 47746624
Alignment:
| Q |
1 |
ttcaaagtgagacttttgggtcaatggatttagtagtaacttttgtcatatgttacaaatgcgcattgcatggaaacaagtacaagatggaaaatgctcg |
100 |
Q |
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| T |
47746398 |
ttcaaagtgagacttttgggtcaatggatttagtagtaacttttgtcatatgttacaaatgcgcattgcatggaaacaagtacaagatggaaaatgctcg |
47746497 |
T |
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| Q |
101 |
gaagttcttcaatttgaagacttgtatggttacaagatcaaatgaaaatgaaaggtgtagacgctgtcaaaataagaaaacgttaacaaaaagtaaaaac |
200 |
Q |
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| T |
47746498 |
gaagttcttcaatttgaagacttgtatggttacaagatcaaatgaaaatgaaaggtgtagacgctgtcaaaataagaaaacgttaaaaaaaagtaaaaac |
47746597 |
T |
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| Q |
201 |
aattattatagctaaaaggcgacccta |
227 |
Q |
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| T |
47746598 |
aattattatagctaaaaggcgacccta |
47746624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 74 - 220
Target Start/End: Original strand, 47718676 - 47718822
Alignment:
| Q |
74 |
aaacaagtacaagatggaaaatgctcggaagttcttcaatttgaagacttgtatggttacaagatcaaatgaaaatgaaaggtgtagacgctgtcaaaat |
173 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||| || |||||| |
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| T |
47718676 |
aaacaagtacaagatggaaaatgctcggaagtttttcaatttgaagacttgtatagttacaagaccaaatgaaaatgaaaggtgtagacactcacaaaat |
47718775 |
T |
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| Q |
174 |
aagaaaacgttaacaaaaagtaaaaacaattattatagctaaaaggc |
220 |
Q |
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| T |
47718776 |
aagaaaacattaacataaagtaaaaacaattattatagctaaaaggc |
47718822 |
T |
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