View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19744_high_56 (Length: 209)
Name: NF19744_high_56
Description: NF19744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19744_high_56 |
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Alignment Details
Target: chr6 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 11 - 193
Target Start/End: Original strand, 34878824 - 34879006
Alignment:
| Q |
11 |
agcacagaggttggagaaaaaggagaacacctgtgatgttgactgggaaagttcattcttcatttggcatcgtccgacgtctaacattaggaaaattcca |
110 |
Q |
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| T |
34878824 |
agcaaagaggttggagaaaaaggagaacacctgtgatgttgactgggaaagttcattcttcatttggcatcgtccgacgtctaacattaggaaaattcca |
34878923 |
T |
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| Q |
111 |
aacctctctgaggatctttggttagtctattcaacgttaccaaacattgtgtttttcgctatttgcattttcgtatctttatt |
193 |
Q |
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| T |
34878924 |
aacctctctgaggatctttggttagtctattcaacgttaccaaacattgtgtttttcgctatttgcattttcgtatctttatt |
34879006 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 41810621 - 41810576
Alignment:
| Q |
148 |
taccaaacattgtgtttttcgctatttgcattttcgtatctttatt |
193 |
Q |
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| T |
41810621 |
taccaaacattgtgtgtttctctgtttgcattttcatatctttatt |
41810576 |
T |
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