View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19744_high_6 (Length: 473)
Name: NF19744_high_6
Description: NF19744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19744_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 76 - 466
Target Start/End: Complemental strand, 34330426 - 34330036
Alignment:
| Q |
76 |
agcagagtttcaccagtagtgatcaatgttaacaatgaaacagaaagcattgttataccagatacaacaagatactcatctgcttcatcaatggatggtt |
175 |
Q |
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| T |
34330426 |
agcagagtttcaccagtagtgatcaatgttaacaatgaaacagaaagcattgttataccagatacaacaagatactcatctgcttcatcaatggatggtt |
34330327 |
T |
|
| Q |
176 |
atgcaaacatcagaaactatcgagctcgttctttccatgctgcaacaccaacagcttcatcagaagctagctggaacagtcaacaaggtttgttatcaca |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34330326 |
atgcaaacatcagaaactatcgagctcgttctttccatgctgcaacaccaacagcttcatcagaagctagctggaacagtcaacaaggtttgttatcaca |
34330227 |
T |
|
| Q |
276 |
cccagcaggtgctatctcagttaacatcaaaaacccttcaaatccaaatcctaacaacagcaacaaacacaaatcatcactttctaaaccaaattggttt |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34330226 |
cccagcaggtgctatctcagttaacatcaaaaacccttcaaatccaaatcctaacaacagcaacaaacacaaatcatcactttctaaaccaaattggttt |
34330127 |
T |
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| Q |
376 |
ttaaggagaaaatgtccctgcacaggtaaaaaatcagttcaagtcaatgnnnnnnnnttaacagaattacccaaaaacaatatcaaaattc |
466 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
34330126 |
ttaaggagaaaatgtccctgcacaggtaaaaaatcagttcaagtcaatgaaaaaaaattaacagaattacccaaaaacaatatcaaaattc |
34330036 |
T |
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