View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19744_high_7 (Length: 470)
Name: NF19744_high_7
Description: NF19744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19744_high_7 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 18 - 470
Target Start/End: Original strand, 13087397 - 13087855
Alignment:
| Q |
18 |
agtaataatcattatcatttgtttggattaaacaatactcacattattacatccaaaaaacctcactccattttgataggagccagatccaatacgacct |
117 |
Q |
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| T |
13087397 |
agtaataaccattatcatttgtttggattaaacaatactcacattattacatccaaaaaacctcactccattttgataggagccagatccaatacgacct |
13087496 |
T |
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| Q |
118 |
tattgaaacctatgatttgtaatttacattatcgtaagtttttaattttatatttgtttttgttgttaatgatgatga------atgcaaataggagtgc |
211 |
Q |
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| T |
13087497 |
tattgaaacgtatgatttgtactttacattatcgtaagtttttaattttatattcgtttttgttgttaatgatgatgaatatgaatgcaaataggagtgc |
13087596 |
T |
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| Q |
212 |
gtatacacgctatatgtaaagactggatcaatcatcaaaggaggaacagattcaaaaatcagcattagattcgacgatgcaaagaaccaatcagtatgga |
311 |
Q |
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| T |
13087597 |
gtatacacaatatatgtaaagactggatcaatcatcaaaggtggaacagattcgaaaatcagcattagattcgacgatgcaaagaaccaatcagtgtgga |
13087696 |
T |
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| Q |
312 |
tcccaaacctaaaatcatggggtgcaatgggagaaggtcataactacttcgagcgcggaaatgtggatgccttcaccggacgtggaccatgcatcaaatc |
411 |
Q |
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| T |
13087697 |
tcccaaacctaaaatcatggggtgcaatgggagaaggtcataactacttcgagcgtggaaatgtggatgccttcaccggacgtggaccatgcatcaactc |
13087796 |
T |
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| Q |
412 |
acgtgtttgccgcctcaacctcgcctcagacggatctgggtaccaccatgggtggtact |
470 |
Q |
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| T |
13087797 |
acgtgtttgccgcctcaacctcgcctcagacggatctgggtaccaccatgggtggtact |
13087855 |
T |
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