View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19744_low_11 (Length: 464)
Name: NF19744_low_11
Description: NF19744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19744_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 424; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 18 - 453
Target Start/End: Original strand, 51114943 - 51115378
Alignment:
| Q |
18 |
cacatgtagaacaatgtttcgcacgaagaggcctgacaatcttgcatgttgaacaaagttgggaccaatttccagctagcaaaaagggctcataatcttg |
117 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51114943 |
cacatgtagaacaatgtttcgcacgaagaggcctaacaatcttgcatgttgaacaaagttgggaccaatttccagctagcaaaaagggctcataatcttg |
51115042 |
T |
|
| Q |
118 |
cattttcttaatgtcataatgcccattcattctgatataacctggatccttcttgctacacatatgaaacatcacaaatccaacagtagcaagtaacgct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51115043 |
cattttcttaatgtcataatgcccattcattctgatataacctggatccttcttgctacacatatgaaacatcacaaatccaacagtagcaagtaacgct |
51115142 |
T |
|
| Q |
218 |
ccaaaccaaccaaaaaggccggttgtagttgttagcgttggcatatttgttgccaacacgaccgaataaatataggtgaaaaatagcatagaaattatgc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51115143 |
ccaaaccaaccaaaaaggccggttgtagttgttagcgttggcatatttgttgccaacacgaccgaataaatataggtgaaaaatagcatagaaattatgc |
51115242 |
T |
|
| Q |
318 |
acttgagtcctgataaaacaacgaagtcttcaaggctctcaagtcgtacttcaaacatccttagggagttttcaaggaaaaaagcaacttgttcgtgatt |
417 |
Q |
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| T |
51115243 |
acttgagtcctgataaaacaacgaagtctccaaggctctcaagtcgtacttcaaacatccttagggagttttcaaggaaaaaagcaacttgttcgtgatt |
51115342 |
T |
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| Q |
418 |
atgagaaacaagttgcgctggtgtaaggccagtatt |
453 |
Q |
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| T |
51115343 |
atgagaaacaagttgcgatggtgtaaggccagtatt |
51115378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 51105391 - 51105473
Alignment:
| Q |
18 |
cacatgtagaacaatgtttcgcacgaagaggcctgacaatcttgcatgttgaacaaagttgggaccaatttccagctagcaaa |
100 |
Q |
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| T |
51105391 |
cacatatagcacaatgtttcgtacgaagaggcctgataatcttgcgtgttgcacaaatttgggaccaatttccagctagcaaa |
51105473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 136 - 239
Target Start/End: Original strand, 51105533 - 51105636
Alignment:
| Q |
136 |
atgcccattcattctgatataacctggatccttcttgctacacatatgaaacatcacaaatccaacagtagcaagtaacgctccaaaccaaccaaaaagg |
235 |
Q |
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|||||||||||||||||||| |||||||||||| |||||||| ||| | |||||| || ||||||||||| |||||| |||||||||| |||||||| |
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| T |
51105533 |
atgcccattcattctgatattacctggatccttggtgctacacctataagacatcaacaacccaacagtagctagtaacactccaaaccatgcaaaaagg |
51105632 |
T |
|
| Q |
236 |
ccgg |
239 |
Q |
| |
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|||| |
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| T |
51105633 |
ccgg |
51105636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 270
Target Start/End: Complemental strand, 48037342 - 48037243
Alignment:
| Q |
171 |
tgctacacatatgaaacatcacaaatccaacagtagcaagtaacgctccaaaccaaccaaaaaggccggttgtagttgttagcgttggcatatttgttgc |
270 |
Q |
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|||||||| ||| ||||||||| ||||||||||||||||| ||| |||||||||| |||| ||||| | || | ||| ||| |||||||||||||||| |
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| T |
48037342 |
tgctacacctataaaacatcaccaatccaacagtagcaagcaacactccaaaccatgcaaagaggccagctgatgctgtcagctttggcatatttgttgc |
48037243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 100
Target Start/End: Complemental strand, 48038384 - 48038337
Alignment:
| Q |
53 |
acaatcttgcatgttgaacaaagttgggaccaatttccagctagcaaa |
100 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
48038384 |
acaaccttgcatgttgcacaaagttgggaccaatttccagctagcaaa |
48038337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 48038558 - 48038517
Alignment:
| Q |
18 |
cacatgtagaacaatgtttcgcacgaagaggcctgacaatct |
59 |
Q |
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||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
48038558 |
cacatgtagaacaatgttttgcacgaagaggtctgacaatct |
48038517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 168
Target Start/End: Complemental strand, 48038096 - 48038064
Alignment:
| Q |
136 |
atgcccattcattctgatataacctggatcctt |
168 |
Q |
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|||||||||| |||||||||||||||||||||| |
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| T |
48038096 |
atgcccattcgttctgatataacctggatcctt |
48038064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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