View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19744_low_12 (Length: 462)
Name: NF19744_low_12
Description: NF19744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19744_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 22 - 444
Target Start/End: Complemental strand, 5243285 - 5242863
Alignment:
| Q |
22 |
gtcttgaacttggactcatcaatatcaataccttcctcttcagcacgttctcctcctgacttctccatagtgctcagtcctcctttacgtcccatctcct |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5243285 |
gtcttgaacttggactcatcaatatcaataccttcctcttcagcacgttctcctcctgacttctccatagtgctcagtcctcctttacgtcccatctcct |
5243186 |
T |
|
| Q |
122 |
gatacccttctgtccctagttgctccttccttgtctgccctcccttgctccttcctttaattaaacatcaaaaattagtatcaaattttaagtatataat |
221 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5243185 |
gatacccttctgtccctagttgctccttccttgtctgccctcccttgctccttcctttaattaaacaccaaaaattagtatcaaattttaagtatataat |
5243086 |
T |
|
| Q |
222 |
aatatgcattaatcataaactaatgtataaccttcagcaagatgttcctgagcctcaaggctcttgccaccagtgccaccaggaacaacagtctctcctt |
321 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5243085 |
aatatgcattaatcataaactaatgtataaccttcagcaagatgttcctgagcctcaaggctcttgccaccagtgccaccaggaacaacagtctctcctt |
5242986 |
T |
|
| Q |
322 |
gctttgccttctcctcaagctcttgtcggttttgttgtttagatgccattgttttttctcaaatttggattggttgattatgctatgtagtgtcactttc |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5242985 |
gctttgccttctcctcaagctcttgtcggttttgttgtttagatgccattgttttttctcaaatttggattggttgattatgctatgtagtgtcactttc |
5242886 |
T |
|
| Q |
422 |
ttgatcagtaagtactcgaagct |
444 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
5242885 |
ttgatcagtaagtactcgaagct |
5242863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 25522985 - 25523121
Alignment:
| Q |
28 |
aacttggactcatcaatatcaataccttcctcttcagcacgttctcctcctgacttctccatagtgctcagtcctcctttacgtcccatctcctgatacc |
127 |
Q |
| |
|
|||||||| |||||||| || || |||||||| ||||||||| | | || ||||| |||||||| || |||||||||||||| ||||| || ||||||| |
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| T |
25522985 |
aacttggattcatcaatgtctattccttcctcagcagcacgttgttcaccagacttatccatagtactgagtcctcctttacggcccatttcttgatacc |
25523084 |
T |
|
| Q |
128 |
cttctgtccctagttgctccttccttgtctgccctcc |
164 |
Q |
| |
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||||| |||| | ||||| ||||||||||||||||| |
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| T |
25523085 |
cttctctccccatctgctctttccttgtctgccctcc |
25523121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 252 - 370
Target Start/End: Original strand, 25523273 - 25523391
Alignment:
| Q |
252 |
ccttcagcaagatgttcctgagcctcaaggctcttgccaccagtgccaccaggaacaacagtctctccttgctttgccttctcctcaagctcttgtcggt |
351 |
Q |
| |
|
||||||||||| |||| ||||| ||||| ||||| ||||| ||||||||||||| |||||| || || || ||||| |||||||||| |||| |||| |
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| T |
25523273 |
ccttcagcaaggtgttgttgagcttcaagactctttccacctgtgccaccaggaataacagtttcaccaagccttgccctctcctcaagttcttcacggt |
25523372 |
T |
|
| Q |
352 |
tttgttgtttagatgccat |
370 |
Q |
| |
|
||||||||| ||| ||||| |
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|
| T |
25523373 |
tttgttgttgagacgccat |
25523391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 25523128 - 25523181
Alignment:
| Q |
111 |
tcccatctcctgatacccttctgtccctagttgctccttccttgtctgccctcc |
164 |
Q |
| |
|
||||||||| ||||| ||||||| ||||| |||| |||||||||||||||||| |
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|
| T |
25523128 |
tcccatctcttgatatccttctgaccctaactgctgcttccttgtctgccctcc |
25523181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 370
Target Start/End: Original strand, 2954053 - 2954117
Alignment:
| Q |
306 |
acaacagtctctccttgctttgccttctcctcaagctcttgtcggttttgttgtttagatgccat |
370 |
Q |
| |
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||||||| |||||| | ||||||||| |||||||||||||||| |||||||||| ||||||||| |
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|
| T |
2954053 |
acaacaggctctccctcctttgccttttcctcaagctcttgtcacttttgttgttgagatgccat |
2954117 |
T |
|
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