View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19744_low_13 (Length: 431)
Name: NF19744_low_13
Description: NF19744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19744_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 42198196 - 42197786
Alignment:
| Q |
1 |
aacacctttttgtttttcttcttcttaggatcaagaccactttgttcatttctgctggcatcaacaatctgctgcatatgaacaataattaatcaaagaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42198196 |
aacacctttttgtttttcttcttcttaggatcaggaccactttgttcatttctgctggcatcaacaatctgctgcatatgaacaataattaatcaaagaa |
42198097 |
T |
|
| Q |
101 |
aaggaaacatcaccaagttttaacattgttgaatagttgtctatattatggaactctaaataggataccaaaggatatggttgatgataaagtacttcag |
200 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42198096 |
aagtaaacatcaccaagttttaacattgttgaatagttgtctatattatggaactctaaataggataccgaaggatatggttgatgataaagtacttcag |
42197997 |
T |
|
| Q |
201 |
aacattattccgaccttaaataaattttcccaaacaaactcaaatagggcgatatattaaaaattacaaaaggaaggatcatcgtcgaatatcttccatt |
300 |
Q |
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|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42197996 |
aacattattctgaccttaaataaattttcccaaacaaactcaaatagggcgatatattaaaaattacaaaaggaaggatcatcgtcgaatatcttccatt |
42197897 |
T |
|
| Q |
301 |
catcattggtggtgagtacagaacacaatgtaaaggtaactaaaataaaaggtaggttatcattgaatactgtgctaaaatactcggtgaaatccatacc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42197896 |
catcattggtggtgagtacagaacacaatgtaaaggtaactaaaat-aaaggtaggttatcattgaatattgtgctaaaatactcggtgaaatccatacc |
42197798 |
T |
|
| Q |
401 |
tgtactacagac |
412 |
Q |
| |
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|||||||||||| |
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|
| T |
42197797 |
tgtactacagac |
42197786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 21199660 - 21199252
Alignment:
| Q |
1 |
aacacctttttgtttttcttcttcttaggatcaagaccactttgttcatttctgctggcatcaacaatctgctgcatatgaacaataattaatcaaagaa |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21199660 |
aacacctttttgtttttcttctt---aggatcaggaccaccttgttcctttctgctggcatcaacaatctgctgcatatgaacaataattaatcaaagaa |
21199564 |
T |
|
| Q |
101 |
aaggaaacatcaccaagttttaacattgttgaatagttgtctatattatggaactctaaataggataccaaaggatatggttgatgataaagtacttcag |
200 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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|
| T |
21199563 |
aagtaaacatcaccaagttttaacattgttgaatagttgtctatattatggaactctaaataggataccgaaggatatggttgatgataaagtatttcag |
21199464 |
T |
|
| Q |
201 |
aacattattccgaccttaaataaattttcccaaacaaactcaaatagggcgatatattaaaaattacaaaaggaaggatcatcgtcgaatatcttccatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
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|
| T |
21199463 |
aacattattccgaccttaaataaattttcccaaacaaactcaaaaagggcgatatattaaaaattacaaaacgaaggatcatcatcgaatatcttccatt |
21199364 |
T |
|
| Q |
301 |
catcattggtggtgagtacagaacacaatgtaaaggtaactaaaataaaaggtaggttatcattgaatactgtgctaaaatactcggtgaaatccatacc |
400 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||| |
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|
| T |
21199363 |
catcattggtggtgagtacagaacataatgtaaaggtaactaaaataaaaggtaggttatcattgcatattgtgctaaaatactgggtgaaatccatacc |
21199264 |
T |
|
| Q |
401 |
tgtactacagac |
412 |
Q |
| |
|
|||||||||||| |
|
|
| T |
21199263 |
tgtactacagac |
21199252 |
T |
|
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