View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19744_low_16 (Length: 403)
Name: NF19744_low_16
Description: NF19744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19744_low_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 13 - 322
Target Start/End: Original strand, 14583050 - 14583361
Alignment:
| Q |
13 |
aatatggactcataaaacttgggtaatgttttaccctattattcaatagttgatataaataaggttgtattagtcatgttaaaaatatacatt---tgat |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14583050 |
aatatggactcataaaacttgggtaatgttttaccctattattcaatagttgatataaataaggttgtattagtcatgttaaaaatatacattatttgat |
14583149 |
T |
|
| Q |
110 |
cccaaggttgctggcatgagtgtttcgccactcttgttgtttaaccaaggccgtgcattcaatccttaaaaatgcagtcacagtttaggtgaatactata |
209 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14583150 |
cc-aaggttgctggcatgagtgtttcgccactcttgtcgtttaaccaaggcggtgcattcgatccttaaaaatgcagtcacagtttaggtgaatactata |
14583248 |
T |
|
| Q |
210 |
ccacaacgagccgtatgatgcaagtagttgtccaccaaggtcaccatatatattagcttagagttaagcattattcaggttgaactgaataatagtcaaa |
309 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14583249 |
ccacaacgagccgtctgatgcaagtagttgtccaccaaggtcaccatatatattagcttagagttaagcattattcaggttgaactgaataatagtcaaa |
14583348 |
T |
|
| Q |
310 |
acaaccaatgcca |
322 |
Q |
| |
|
||||||||||||| |
|
|
| T |
14583349 |
acaaccaatgcca |
14583361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 320 - 371
Target Start/End: Original strand, 14583398 - 14583449
Alignment:
| Q |
320 |
ccaatttgatagtccaaataatggagcaccaaaatcacaatatataatgaag |
371 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
14583398 |
ccaatttggtagtccaaataatgaagcaccaaaatcacaatatataatgaag |
14583449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University