View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19744_low_17 (Length: 399)
Name: NF19744_low_17
Description: NF19744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19744_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 99 - 383
Target Start/End: Original strand, 18715596 - 18715875
Alignment:
| Q |
99 |
caatttattactatgtttcataaattcaaaatctttgtattttt-ccgatcaaaaattccttttggttttggtttcaaccaaagtatcttatcttatctt |
197 |
Q |
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| T |
18715596 |
caatttattactatgtttcacaaattcaaaatctctgtattttttccgatcaaaaattcctttt------ggtttcaaccaaagtatcttatcttatctt |
18715689 |
T |
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| Q |
198 |
aattatgtaaatatagccttaaattatcatatgatataaatcatatcatatgataaaatatttatctctaaagtgccataatcccagttgaaaacatttg |
297 |
Q |
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| T |
18715690 |
aattatgtaaatatagccttaaattatcatatgatataaatcatatcatatgataaagtattaatctctaaagtgccataatcccagttgaaaacatttg |
18715789 |
T |
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| Q |
298 |
gtcctttgtgtatggagaacttgacaactccattgatgatgacctacacttctctttcctctcatccatcattatttgctttgaac |
383 |
Q |
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| T |
18715790 |
gtcctttgtgtatggagaacttgacaactccattgatgatgatctacacttctctttcctctcatccatcattatttgctttgaac |
18715875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 18715511 - 18715548
Alignment:
| Q |
14 |
ctgtgcaaaattgagatcccaacttcatagttctctgc |
51 |
Q |
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| T |
18715511 |
ctgtgcaaaattgagatcccaacttcatagttctctgc |
18715548 |
T |
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