View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19744_low_2 (Length: 545)
Name: NF19744_low_2
Description: NF19744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19744_low_2 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 481; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 7 - 545
Target Start/End: Complemental strand, 3207443 - 3206906
Alignment:
| Q |
7 |
actgagatgaagcaaaaggtaacatattgggttgattttatacccgaagataaagagaatagaggtgataactttattgctcaaggctctatcaaatggg |
106 |
Q |
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| T |
3207443 |
actgagatgaagcaaaaggtaacatattgggttgattttatacctgaagataaagagaatagaggtgataactttattgctcaaggctctatcaaatggg |
3207344 |
T |
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| Q |
107 |
tttctgcaaagtattctgttagcattcctattgctgttgtctttgagtatgttggcacagtaaattaattatatcatgactttttattaaggaataaata |
206 |
Q |
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| T |
3207343 |
tttctgcaaagtattctgttagcattcctattgctgttgtctttgagtatgttggcacggtaaattaattatagcatgactttttattaaggaataaata |
3207244 |
T |
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| Q |
207 |
taggaactaaaaagtttgcaaacatgtgtttgaaacttggagcttatttaatttcttagacgttaattttaagtccatttctcttatgaaattatgagtc |
306 |
Q |
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| T |
3207243 |
taggaactaaaaagtttgcaaacatgtgtttgaaacttggagcttatttaatttcttagacgttaattttaagtccatttctcttatgaaattatgagtc |
3207144 |
T |
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| Q |
307 |
ttaagtaatcttatttcataatcttctttcaaatgatagtaatatgaattttatcaagtaataaagggtgcattagaagaaggnnnnnnnnnncattaaa |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||| |
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| T |
3207143 |
ttaagtaatcttatttcataatcttctttcaaatgatagtaatatgaattttatcaaataataaagggtgcattagaagaa-gaaaaaaaatacattaaa |
3207045 |
T |
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| Q |
407 |
ctgggttaccaattttcttgtttcaatattcctctatacatagcatgtttccgaagtataatatatattcttgcttcaagttaaaagctatttaacaatg |
506 |
Q |
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| T |
3207044 |
ctgggttaccaattttcttgtttcaatattcctctatacatagcatgtttccgaagtataatatatattcttgcttcaagttaaaagctatttaacaatg |
3206945 |
T |
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| Q |
507 |
gaattttttaacttagattattattttgcatgtaccact |
545 |
Q |
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| T |
3206944 |
gagttttttaacttagattattattttgcatgtaccact |
3206906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 14 - 228
Target Start/End: Complemental strand, 3201462 - 3201242
Alignment:
| Q |
14 |
tgaagcaaaaggtaacatattgggttgattttatacccgaagataaagagaatagaggtgataactttattgctcaaggctctatcaaatgggtttctgc |
113 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||| |
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| T |
3201462 |
tgaagcaaaaggtaacatattgggttgattttatacctgaagacaaagagaatagaggtgataactttattgctcaaggatctatcaagtggatttctgc |
3201363 |
T |
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| Q |
114 |
aaagtattctgttagcattcctattgctgttgtctttgagt----atgttggcacagtaaattaattatatcatgac-ttttta--ttaaggaataaata |
206 |
Q |
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|||||||||||||||||||||||||||||| || |||| || ||| ||||| | ||||||||||| | |||||| || ||| |||||||||||||| |
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| T |
3201362 |
aaagtattctgttagcattcctattgctgtcgtatttgtgtgaaaatg-tggcaaaataaattaattagagcatgacattattatgttaaggaataaata |
3201264 |
T |
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| Q |
207 |
taggaactaaaaagtttgcaaa |
228 |
Q |
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|||||| ||||||||||||||| |
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| T |
3201263 |
taggaaataaaaagtttgcaaa |
3201242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 137
Target Start/End: Complemental strand, 3215379 - 3215249
Alignment:
| Q |
7 |
actgagatgaagcaaaaggtaacatattgggttgattttatacccgaagataaagagaatagaggtgataactttattgctcaaggctctatcaaatggg |
106 |
Q |
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||||||| ||||||||| || ||||| | ||||| ||||| ||||||| | | || ||||||||||||||| ||| |||| || |||||||| |||| |
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| T |
3215379 |
actgagaagaagcaaaaagttacatactcggttgcttttacacccgaaaacatagtgaatagaggtgataaggaaatttctcagggatctatcaagtggg |
3215280 |
T |
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| Q |
107 |
tttctgcaaagtattctgttagcattcctat |
137 |
Q |
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|||||| ||||||| | ||||| || ||||| |
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| T |
3215279 |
tttctggaaagtataccgttagaatccctat |
3215249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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