View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19744_low_21 (Length: 381)
Name: NF19744_low_21
Description: NF19744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19744_low_21 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 1092690 - 1093050
Alignment:
| Q |
1 |
atcacatttatttctttactatttgtgtaattttaatacattggtcttctttgcccagtctattttaatgttctctcctgtccaattctataggtagtaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1092690 |
atcacatttatttctttactatttgtgtaattttaatacattggtcttctttgcccagtctattttaatgttctctcctgtccaattctataggtagtaa |
1092789 |
T |
|
| Q |
101 |
ttccatgctttgttagagtcataatacacttctattctggtgttgtttctccctctcaacatggtggtgaaaaacacaaaccaattagaggaaaccacta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1092790 |
ttccatgctttgttagagtcataatacacttccattctggtgttgtttctccctctcaacatggtggtgaaaaacacaaaccaattagaggaaaccacta |
1092889 |
T |
|
| Q |
201 |
attccacttatgatagagaagctgaagtgaaagcttttgatgattcaaaagtaggtgtcaaaggtttggtggagtctggggtgtcgaagattccacgcat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1092890 |
attccacttatgatagagaagctgaagtgaaagcttttgatgattcaaaagtaggtgtcaaaggtttggtggagtctggggtgtcgaaaattccacgcat |
1092989 |
T |
|
| Q |
301 |
gttccatactgggaagatggaaatctccgaagactcagctagtgagtccaagttgagtatt |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1092990 |
gttccatactgggaagatggaaatctccgaagactcagctagtgagtccaagttgagtatt |
1093050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 303
Target Start/End: Complemental strand, 25225169 - 25225067
Alignment:
| Q |
201 |
attccacttatgatagagaagctgaagtgaaagcttttgatgattcaaaagtaggtgtcaaaggtttggtggagtctggggtgtcgaagattccacgcat |
300 |
Q |
| |
|
||||||| ||||||||| | | |||||||||||||||||||||||| ||| | ||||| | |||| | ||||| ||||||| | ||||| || ||||| |
|
|
| T |
25225169 |
attccacatatgatagaaatgttgaagtgaaagcttttgatgattcgaaacttggtgttagaggtcttatggagcgtggggtgacaaagatcccgcgcat |
25225070 |
T |
|
| Q |
301 |
gtt |
303 |
Q |
| |
|
||| |
|
|
| T |
25225069 |
gtt |
25225067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 303
Target Start/End: Original strand, 26168213 - 26168315
Alignment:
| Q |
201 |
attccacttatgatagagaagctgaagtgaaagcttttgatgattcaaaagtaggtgtcaaaggtttggtggagtctggggtgtcgaagattccacgcat |
300 |
Q |
| |
|
||||||| ||||||||| | | |||| |||||| |||||||||||||||| | ||||| | |||| | ||||| ||||||| | ||||| |||||||| |
|
|
| T |
26168213 |
attccacatatgatagaaatgatgaattgaaagtttttgatgattcaaaacttggtgtaagaggtcttatggagcgtggggtgacaaagatcccacgcat |
26168312 |
T |
|
| Q |
301 |
gtt |
303 |
Q |
| |
|
||| |
|
|
| T |
26168313 |
gtt |
26168315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 303
Target Start/End: Original strand, 26395846 - 26395926
Alignment:
| Q |
223 |
tgaagtgaaagcttttgatgattcaaaagtaggtgtcaaaggtttggtggagtctggggtgtcgaagattccacgcatgtt |
303 |
Q |
| |
|
|||||||||||||||||| || |||||||| ||||| | |||| | |||||| |||||| | ||||| ||||||||||| |
|
|
| T |
26395846 |
tgaagtgaaagcttttgaagaatcaaaagttggtgtaagaggtcttgtggagagtggggtaacaaagatcccacgcatgtt |
26395926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 119; Significance: 1e-60; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 128 - 361
Target Start/End: Original strand, 29462555 - 29462786
Alignment:
| Q |
128 |
acttctattctggtgttgtttctccctctcaacatggtggtgaaaaacacaaaccaattagaggaaaccactaattccacttatgatagagaagctgaag |
227 |
Q |
| |
|
|||| |||||||||||||||| ||| |||| |||||||| ||||| ||||||||||| ||||| ||| | ||| |||||||||||||||||| |||| |
|
|
| T |
29462555 |
acttttattctggtgttgtttg--cctatcaatatggtggtagaaaactcaaaccaattaaaggaatccagtgatttcacttatgatagagaagccgaag |
29462652 |
T |
|
| Q |
228 |
tgaaagcttttgatgattcaaaagtaggtgtcaaaggtttggtggagtctggggtgtcgaagattccacgcatgttccatactgggaagatggaaatctc |
327 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||| | ||| ||||| |||||||||| |
|
|
| T |
29462653 |
ttaaagcttttgatgattcaaaagttggtgtcaaaggtttggtggattctggggtgtcaaagattccacgcatgttctacactaggaagttggaaatctc |
29462752 |
T |
|
| Q |
328 |
cgaagactcagctagtgagtccaagttgagtatt |
361 |
Q |
| |
|
||| | |||||||||| ||||||||||||||| |
|
|
| T |
29462753 |
tgaaagcacagctagtgactccaagttgagtatt |
29462786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 153 - 308
Target Start/End: Original strand, 19844333 - 19844488
Alignment:
| Q |
153 |
ctctcaacatggtggtgaaaaacacaaaccaattagaggaaaccactaattccacttatgatagagaagctgaagtgaaagcttttgatgattcaaaagt |
252 |
Q |
| |
|
||||||| |||||||| |||||| |||||||| |||| || ||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
19844333 |
ctctcaatatggtggtaaaaaactcaaaccaagtagaaaaatccactaattccacttatgatagatacaatgaagtgaaagcttttgatgattcaaaagc |
19844432 |
T |
|
| Q |
253 |
aggtgtcaaaggtttggtggagtctggggtgtcgaagattccacgcatgttccata |
308 |
Q |
| |
|
||||| | ||||||||||||||| || ||||||||||| |||| |||||||||| |
|
|
| T |
19844433 |
tggtgtgagaggtttggtggagtccggagtgtcgaagatcccacagatgttccata |
19844488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 132 - 358
Target Start/End: Original strand, 19890171 - 19890395
Alignment:
| Q |
132 |
ctattctggtgttgtttctccctctcaacatggtggtgaaaaacacaaaccaattagaggaaaccactaattccacttatgatagagaagctgaagtgaa |
231 |
Q |
| |
|
||||| ||||||||||| |||||||| |||||||| ||||||||||| || ||||||||| | ||||||||||||||||||||| || | |||||||| |
|
|
| T |
19890171 |
ctattttggtgttgtttt--cctctcaatatggtggtaaaaaacacaaatcagttagaggaatctactaattccacttatgatagaaaaacagaagtgaa |
19890268 |
T |
|
| Q |
232 |
agcttttgatgattcaaaagtaggtgtcaaaggtttggtggagtctggggtgtcgaagattccacgcatgttccatactgggaagatggaaatctccgaa |
331 |
Q |
| |
|
| ||||||||||||||||| ||||||| ||||||||||||| ||||||||| ||||| || ||||| || ||||| || ||| |||| ||| ||| |
|
|
| T |
19890269 |
aaattttgatgattcaaaagctggtgtcagaggtttggtggagcatggggtgtcaaagatcccgcgcatttttcataccggtaagttggatatcggtgaa |
19890368 |
T |
|
| Q |
332 |
gactcagctagtgagtccaagttgagt |
358 |
Q |
| |
|
|||| |||||||| || || |||||| |
|
|
| T |
19890369 |
aactcggctagtgattctaaattgagt |
19890395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 132 - 358
Target Start/End: Complemental strand, 49465622 - 49465398
Alignment:
| Q |
132 |
ctattctggtgttgtttctccctctcaacatggtggtgaaaaacacaaaccaattagaggaaaccactaattccacttatgatagagaagctgaagtgaa |
231 |
Q |
| |
|
|||||||||| ||||||| | ||||||||||||||| ||||||||||| |||||||||||| ||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
49465622 |
ctattctggttttgtttc--cttctcaacatggtggtaaaaaacacaaatcaattagaggaagccactgattccacttatgatagaaaagctgaagtgaa |
49465525 |
T |
|
| Q |
232 |
agcttttgatgattcaaaagtaggtgtcaaaggtttggtggagtctggggtgtcgaagattccacgcatgttccatactgggaagatggaaatctccgaa |
331 |
Q |
| |
|
|||||||||||||||| || ||| ||||| |||||||| ||||||||||| || ||||| |||||| | |||||| | |||||| |||| ||| ||| |
|
|
| T |
49465524 |
agcttttgatgattcacgagcaggcgtcaatggtttggttgagtctggggtttcaaagatcccacgctttttccatgccgggaagttggacatcggtgaa |
49465425 |
T |
|
| Q |
332 |
gactcagctagtgagtccaagttgagt |
358 |
Q |
| |
|
||||| || |||| |||||||||||| |
|
|
| T |
49465424 |
aactcaacttgtgactccaagttgagt |
49465398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 201 - 303
Target Start/End: Original strand, 8348970 - 8349072
Alignment:
| Q |
201 |
attccacttatgatagagaagctgaagtgaaagcttttgatgattcaaaagtaggtgtcaaaggtttggtggagtctggggtgtcgaagattccacgcat |
300 |
Q |
| |
|
||||||| ||||||||| | |||||||||||||||||||||||||||||| | ||||| | |||| | ||||| |||||| | ||||| |||||||| |
|
|
| T |
8348970 |
attccacatatgatagaaatgctgaagtgaaagcttttgatgattcaaaacttggtgttagaggtcttatggagcgtggggtaacaaagatcccacgcat |
8349069 |
T |
|
| Q |
301 |
gtt |
303 |
Q |
| |
|
||| |
|
|
| T |
8349070 |
gtt |
8349072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University