View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19744_low_22 (Length: 367)
Name: NF19744_low_22
Description: NF19744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19744_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 12 - 349
Target Start/End: Original strand, 39491254 - 39491591
Alignment:
| Q |
12 |
atgaaacaaaggatgctgcttatgaattaccaaaagagtttttgaaagagactgaagggagaggtttggttgtgaaatggtgtgcacaggagaaggtgtt |
111 |
Q |
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| T |
39491254 |
atgaaacaaaggatgctgcttatgaattaccaaaagagtttttgaaagagactgaagggagaggtttggttgtgaaatggtgtgcacaggagaaggtgtt |
39491353 |
T |
|
| Q |
112 |
aatgcaccctgctgttgcttgttttctaagtcattgtggttggaactcaacacttgagacattgataactggtgtgcctgttattggttggccatcttgg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39491354 |
aatgcaccctgctgttgcttgttttctaagtcattgtggttggaactcaacacttgagacattgataactggtgtgcctgttattggttggccatcttgg |
39491453 |
T |
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| Q |
212 |
actgaccaaccaacaaatgctatgcttattcagaatgtgtttaggaatggtgtaaaagtgaaatatggggaagatggggttgcaagtgtagaagagattg |
311 |
Q |
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| T |
39491454 |
actgaccaaccaacaaatgctatgcttattcagaatgtgtttaggaatggtgtaaaagtgaaatatggggaagatggggttgcaagtgtagaagagattg |
39491553 |
T |
|
| Q |
312 |
agaggtgtattaaggaggttttggaaggtccaaatgct |
349 |
Q |
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| T |
39491554 |
agaggtgtattagggaggttttggaagggccacatgct |
39491591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 12 - 349
Target Start/End: Complemental strand, 39287781 - 39287444
Alignment:
| Q |
12 |
atgaaacaaaggatgctgcttatgaattaccaaaagagtttttgaaagagactgaagggagaggtttggttgtgaaatggtgtgcacaggagaaggtgtt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39287781 |
atgaaacaaaggatgctgcttatgaattaccaaaagagtttttgaaagagactgaagggagaggtttggttgtgaaatggtgtgcacaggagaaggtgtt |
39287682 |
T |
|
| Q |
112 |
aatgcaccctgctgttgcttgttttctaagtcattgtggttggaactcaacacttgagacattgataactggtgtgcctgttattggttggccatcttgg |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||| |
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| T |
39287681 |
aatgcaccctgctgttgcttgttttctaagtcattgtggttggaactcaacacttgagacattgataactggtgtgcctgttatttgctggccttcttgg |
39287582 |
T |
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| Q |
212 |
actgaccaaccaacaaatgctatgcttattcagaatgtgtttaggaatggtgtaaaagtgaaatatggggaagatggggttgcaagtgtagaagagattg |
311 |
Q |
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||| |||||||||||||| ||||||||| ||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
39287581 |
cttgatcaaccaacaaatgcaatgcttattgagaatgtgtttaggaatggggtgaaagtgaattatggggaagatggggttgcaagtgtaaaagagattg |
39287482 |
T |
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| Q |
312 |
agaggtgtattaaggaggttttggaaggtccaaatgct |
349 |
Q |
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| T |
39287481 |
agaggtgtattagggaggttatggaagggcctaatgct |
39287444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 155
Target Start/End: Complemental strand, 5906115 - 5905995
Alignment:
| Q |
35 |
gaattaccaaaagagtttttgaaagagactgaagggagaggtttggttgtgaaatggtgtgcacaggagaaggtgttaatgcaccctgctgttgcttgtt |
134 |
Q |
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||||| ||||||| ||||||| |||| || |||| |||||||||||||| | ||||||| || |||||||| |||| |||||||| || ||||||| |
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| T |
5906115 |
gaatttccaaaagggtttttggaagaaacaaaaggaagaggtttggttgtaacatggtgtaatcaagagaaggttttaagccaccctgcagtggcttgtt |
5906016 |
T |
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| Q |
135 |
ttctaagtcattgtggttgga |
155 |
Q |
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|| | |||||||||||||| |
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| T |
5906015 |
ttttgtctcattgtggttgga |
5905995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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