View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19744_low_24 (Length: 350)
Name: NF19744_low_24
Description: NF19744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19744_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 260
Target Start/End: Original strand, 1217300 - 1217545
Alignment:
| Q |
16 |
agaatgtgaggagtcgtctcttaaaaattcacaaagctaggggacattggttaaatggattaatgtatgacactggtaactttgacatgaaagtatattg |
115 |
Q |
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| T |
1217300 |
agaatgcgaggagtcgtctcttaaaaattcacaaagctaggggacattggttaaatggattaatgtatgacattggtaactttgacatgaaagtatattt |
1217399 |
T |
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| Q |
116 |
ttattaggattaaagattgattttgttgttactcaaaaatctatttcacgcatta-ttttctttgagtgatgctaaatacaacgacagattccaccacga |
214 |
Q |
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| T |
1217400 |
ttatttggattaaagattgattttgttgttcctcaaaaatctatttcacgcattatttttctttgagtgatgctaaatacaacgacagattccaccacga |
1217499 |
T |
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| Q |
215 |
aagcatatcacgattttgctgctggccaattaaatcacgtatttgc |
260 |
Q |
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| T |
1217500 |
aagcatatcacgattttgatgttggccaattaaatcacgtatttgc |
1217545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 1225917 - 1225997
Alignment:
| Q |
256 |
tttgcagtccacagttttagttaattgacaaatagagatgagactaatgcgtaattgaggcgaaaaaagaacattattaat |
336 |
Q |
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| T |
1225917 |
tttgcagtccacagttttagttaattgacaaatagagatgagactaatacgtaattgaggcgaaaaaagaacattattaat |
1225997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 19608493 - 19608573
Alignment:
| Q |
256 |
tttgcagtccacagttttagttaattgacaaatagagatgagactaatgcgtaattgaggcgaaaaaagaacattattaat |
336 |
Q |
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| T |
19608493 |
tttgcagtccacagttttagttaattgagaaatagagatgagactaatacgaaattgaggcaagaaaagaacattattaat |
19608573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 256 - 336
Target Start/End: Complemental strand, 37010623 - 37010543
Alignment:
| Q |
256 |
tttgcagtccacagttttagttaattgacaaatagagatgagactaatgcgtaattgaggcgaaaaaagaacattattaat |
336 |
Q |
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| T |
37010623 |
tttgcagtccacagttttagttaattgagaaatagagatgagactaatacgaaattgaggcaagaaaagaacattattaat |
37010543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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