View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19744_low_25 (Length: 337)
Name: NF19744_low_25
Description: NF19744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19744_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 41133335 - 41133514
Alignment:
| Q |
1 |
aaaataacacatacaaaacatgaaattggaccaaaaggtcctttgtataaggaaagaaagaaaagaacttacttttgatttaaggctgcgaagttcaacc |
100 |
Q |
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| T |
41133335 |
aaaataacacatacaaaacatgaaattggaccaaaatgtcctttgtataaggaaagaaagaaaagaacttacttttgatttaaggctgcgaagttcaacc |
41133434 |
T |
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| Q |
101 |
tgtgtaaactggctttgaagcaattgatcagatacgataacaccctcaaattttgacatcttggtaaatcaccaatacat |
180 |
Q |
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| T |
41133435 |
tgtgtaaactggctttgaagcaattgatcagatacaataacaccctcaaattttgacatcttggtaaatcaccaatacat |
41133514 |
T |
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Target: chr5; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 239 - 316
Target Start/End: Original strand, 41133573 - 41133650
Alignment:
| Q |
239 |
gtatttgcagataaaggaataacaacaatgtggtaatgtgaagtactcaacaaactaatgccaaaaacataaaggacc |
316 |
Q |
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| T |
41133573 |
gtatttgcagaaaaaggaataacaacaatgtggtaatgtgaagtactcaacaaactaatgccaaaaacataaaggacc |
41133650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 18575471 - 18575419
Alignment:
| Q |
69 |
ttacttttgatttaaggctgcgaagttcaacctgtgtaaactggctttgaagc |
121 |
Q |
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| T |
18575471 |
ttacttgtgattttaagctgcgaagctcaacttgtgtaaactggttttgaagc |
18575419 |
T |
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