View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19744_low_26 (Length: 336)
Name: NF19744_low_26
Description: NF19744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19744_low_26 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 53 - 284
Target Start/End: Original strand, 36552672 - 36552903
Alignment:
| Q |
53 |
aatgtgtttgcagcaaatcaagttccaaatgcatattgggaattcatgacaatttgcacacattgcaatttcattttccaggtctacatatataatttta |
152 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
36552672 |
aatgtgtttgcagcaaatcaagttccaaatgcatattgggaattcatgacaatttgcacacattgcaatttcattttccaggtctacatatatgatttta |
36552771 |
T |
|
| Q |
153 |
gaaaggccacaatctgtcagagatgtaagaaatcatttgtagctcttgcttataattatcagactgctccatcatctgtaccatttggtgcctcaaaagt |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
36552772 |
gaaaggccacaatctgtcagagatgtaagaaatcatttgtagttcttgcttataattatcagactgccccatcatctgtaccatttggtgcctcaaaagt |
36552871 |
T |
|
| Q |
253 |
gtctccgatgcaagttccaccaaaaccagcct |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
36552872 |
gtctccgatgcaagttccaccaaaaccagcct |
36552903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 84
Target Start/End: Original strand, 36525063 - 36525109
Alignment:
| Q |
38 |
catcacacaaatgggaatgtgtttgcagcaaatcaagttccaaatgc |
84 |
Q |
| |
|
|||||| |||||| |||||| ||||||| |||||||||||||||||| |
|
|
| T |
36525063 |
catcactcaaatgcgaatgtatttgcagaaaatcaagttccaaatgc |
36525109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 202
Target Start/End: Original strand, 36531585 - 36531622
Alignment:
| Q |
165 |
tctgtcagagatgtaagaaatcatttgtagctcttgct |
202 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
36531585 |
tctgtcagaaatgtaagaactcatttgtagctcttgct |
36531622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University