View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19744_low_28 (Length: 310)
Name: NF19744_low_28
Description: NF19744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19744_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 24 - 296
Target Start/End: Original strand, 4006283 - 4006558
Alignment:
| Q |
24 |
cacatgttttatcgttcgatgttcgactagtaaacgttaaccaattaatccaatgtccacaatgcggtgaacatgcttctcaaataagattatctccaat |
123 |
Q |
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| T |
4006283 |
cacatgttttatctttcgatgttcgactagtaaacgttaaccaattaatccaatgtccacaatgcggtgaacatgcttctcaaataagattatctccaat |
4006382 |
T |
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| Q |
124 |
tgaacgagagatgtaaattcgcagaataaagagtagaggaaaagtagtattactactaatacaaataaatatgcaatacttcatatcattgctgattttc |
223 |
Q |
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| T |
4006383 |
tgaacgagtgatgtaaatttgcagaataaagagtagaggaaaagtagtattactactaatacaaataaatatgcaatacttcatatcattgctgattttc |
4006482 |
T |
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| Q |
224 |
aatctatnnnnnnntaatcacaaagagattcctcttatataaca---tattatatggtacattcactggtcataac |
296 |
Q |
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| T |
4006483 |
aatctataaaaaaataatcacaaagagattcctcttatataacatattattatatggtacattcactcgtcataac |
4006558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 4018605 - 4018650
Alignment:
| Q |
184 |
acaaataaatatgcaatacttcatatcattgctgattttcaatctat |
230 |
Q |
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| T |
4018605 |
acaaataaatatgaaatact-catatcattgctgattttcaatctat |
4018650 |
T |
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