View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19744_low_3 (Length: 542)
Name: NF19744_low_3
Description: NF19744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19744_low_3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 13 - 542
Target Start/End: Original strand, 18714985 - 18715514
Alignment:
| Q |
13 |
aaaataccatccaaccactgataa-tccaaacaaatgtatcattctttttaattcaatggtcctttatgttatttaattatattagattgtcatttatca |
111 |
Q |
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| T |
18714985 |
aaaataccatccaaccactgatcagtccaaacaaatgtatcattctttttaattcaatggtcctttatgttatttaattatattagattgtcttttatca |
18715084 |
T |
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| Q |
112 |
ttcttttttctcatgtgcgtcttttat-attacaaacacgcacaagtttatctctttatgttttttcttcatttttattagaaaactgatga---ggtgg |
207 |
Q |
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| T |
18715085 |
ttcttttttctcatgtgtgtcttttatcattacaaacacgcacaagtttatctctttatgttttttcttcatttttattagaaaactgatgaggtggtgg |
18715184 |
T |
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| Q |
208 |
taagtcacataggataatttgttacagnnnnnnnatgttgaaagtaataaaacccaaaactatcctacataaattaacatcagacaatcgagttgaaacc |
307 |
Q |
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| T |
18715185 |
taagtcacataggatagtttgctataatttttttatgttgaaagtaataaaacccataactatcctacataaattgacatcagacaattgaattaaaact |
18715284 |
T |
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| Q |
308 |
tgaggagaagtacactctaagatttcaaaccaac---actgagacaatcaaagtgagtttgtttatggaataaaagtgattgattattcgattatctttt |
404 |
Q |
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| T |
18715285 |
tgaggaggaatacaatctaagatttcaaaccaacactactgagacaatcaaagtgagtttgtttatggaataaa--------attactcgattatctttt |
18715376 |
T |
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| Q |
405 |
ttaatgtgtatgtttccttcaatcgaaaagataaacaacaataaacaaaataaacagtaaaattgaatgcataaaatagttgatcgaacaagttcatatc |
504 |
Q |
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| T |
18715377 |
ttaatgtgtatgtttccttcaatcgaaaagataaacaacaataaacaaaataaacagtaaaatcgaattcataaaatatctgattgaacaagttcatatc |
18715476 |
T |
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| Q |
505 |
ttaggcagaactcaggaacagaacaaccaaaaatctgt |
542 |
Q |
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| T |
18715477 |
ttagacagaactcaggaacagaacaaccaaaaatctgt |
18715514 |
T |
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