View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19744_low_30 (Length: 300)
Name: NF19744_low_30
Description: NF19744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19744_low_30 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 84 - 208
Target Start/End: Original strand, 30587456 - 30587580
Alignment:
| Q |
84 |
atacagggattgccatctttgcttcttccccttttcttttttaagaaacattttggtctacnnnnnnnnattctctcatttgtaatagggtgcaggccca |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
30587456 |
atacagggattgccatctttgcttcttccccttttctttttttagtaacattttggtctacttttttagattctctcatttgtaatagggtgcaggccca |
30587555 |
T |
|
| Q |
184 |
ctcctgactatttttaatgcatttt |
208 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
30587556 |
ctcctgactatttttaatgcatttt |
30587580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 28138284 - 28138229
Alignment:
| Q |
164 |
tgtaatagggtgcaggcccactcctgactatttttaatgcattt-ttagcctttatc |
219 |
Q |
| |
|
||||||||||||||| |||||||||| | | ||||||||||||| |||||||||||| |
|
|
| T |
28138284 |
tgtaatagggtgcagacccactcctgccga-ttttaatgcatttcttagcctttatc |
28138229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 6 - 218
Target Start/End: Original strand, 4292876 - 4293088
Alignment:
| Q |
6 |
ttttgttttgcctttccttgatagcgatatgctaggctagttttgtttacctagggatttgaagtaagtggcagtagaatacagggattgccatctttgc |
105 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||| | | ||||||| ||||||| ||||||||||||| ||||||| | | || ||||||||| ||| |
|
|
| T |
4292876 |
ttttgttttgcctttccttgatagagataggctagttt--tattgtttagctagggaattgaagtaagtggaagtagaaaagatggcttgccatctatgc |
4292973 |
T |
|
| Q |
106 |
ttcttccccttttcttttttaagaaacattttggtctacnnnnnnnnattctctcatttgtaatagggtgcaggcccactcctgac-tatttttaatgca |
204 |
Q |
| |
|
|||| | ||||||||| | | | |||||||||||| | | ||||||||||||||||||||||||||||||||||| | | ||||||||||| |
|
|
| T |
4292974 |
ttctcacacttttctttaatcaaagacattttggtctccatttttagactctctcatttgtaatagggtgcaggcccactcctgccttttttttaatgca |
4293073 |
T |
|
| Q |
205 |
-tttttagcctttat |
218 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
4293074 |
ttttttagcctttat |
4293088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 6 - 219
Target Start/End: Original strand, 8058718 - 8058928
Alignment:
| Q |
6 |
ttttgttttgcctttccttgatagcgatatgctaggctagttt-tgtttacctagggatttgaagtaagtggcagtagaatacagggattgccatctttg |
104 |
Q |
| |
|
|||||||||||||||||||| | | |||||||||| ||||||| ||||| ||||||||||| ||| |||||||||| |||| |||||||||||||| |
|
|
| T |
8058718 |
ttttgttttgcctttccttgtttgagatatgctagtctagtttctgttttgctagggatttgttgtatgtggcagtagtttacatggattgccatcttta |
8058817 |
T |
|
| Q |
105 |
cttcttccccttttcttttttaagaaacattttggtctacnnnnnnnnattctctcatttgtaatagggtgcaggcccactcctgactatttttaatgca |
204 |
Q |
| |
|
|||| ||||||||||||| | ||| || |||| |||| | | |||||||| ||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
8058818 |
cttc-gccccttttcttttatcagacactttttagtcttctgttttagactctctcatatgtaatagggtgcaggccctctcct---attttttaatgca |
8058913 |
T |
|
| Q |
205 |
tttttagcctttatc |
219 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
8058914 |
tttttagcctttatc |
8058928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 230 - 283
Target Start/End: Complemental strand, 375656 - 375603
Alignment:
| Q |
230 |
ttctcaagaaatctactccgtattgcatgattaatatccaatcaaactagcact |
283 |
Q |
| |
|
|||||||| |||||||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
375656 |
ttctcaagtaatctactccttattgcgtgattaatatccaatcaaactagcact |
375603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 82
Target Start/End: Original strand, 12106956 - 12107033
Alignment:
| Q |
6 |
ttttgttttgcctttccttgatagcgatatgctaggctagttt-tgtttacctagggatttgaagtaagtggcagtag |
82 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||||| ||||| ||||||||||| ||||| |||||||| |
|
|
| T |
12106956 |
ttttgttttgcctttccttgtttaagatatgctaggctagtttctgttttgctagggatttgttgtaagcggcagtag |
12107033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University