View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19744_low_33 (Length: 291)
Name: NF19744_low_33
Description: NF19744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19744_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 16 - 260
Target Start/End: Complemental strand, 1554529 - 1554285
Alignment:
| Q |
16 |
atgatgtcaggaagctaatttagagaataaccactttttaaaacttaataatgttgattacaatggagaaggtgttatgagtttgaactttttcaactaa |
115 |
Q |
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| T |
1554529 |
atgatgtcaggaagctaatttagagaataaccactttttaaaacttaataatgttgattacaatggagaaggtgttatgagtttgaactttttcaactaa |
1554430 |
T |
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| Q |
116 |
accaatcaatccaaaaagtgaaagagaattcaactaattgcttcaaataagagaattgtcataattgcataatataaagagtttgaagtacgtaaacagt |
215 |
Q |
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| T |
1554429 |
accaatcaatccaaaaagtgaaagagaattcaactaattgcttcaaataagagaattgtcataattgcataatataaagagtttgaagtacgtaaacagt |
1554330 |
T |
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| Q |
216 |
agacataaggacttcaaaagtagtgtataaaaacatataatagtt |
260 |
Q |
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| T |
1554329 |
agacataaggacttcaaaagtactgtataaaaacatataatagtt |
1554285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 180
Target Start/End: Complemental strand, 1550751 - 1550709
Alignment:
| Q |
138 |
agagaattcaactaattgcttcaaataagagaattgtcataat |
180 |
Q |
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| T |
1550751 |
agagaattcaactaattgcttcaaataagagaattgtcataat |
1550709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 253
Target Start/End: Complemental strand, 1550681 - 1550612
Alignment:
| Q |
180 |
ttgcataatataaagagtttgaagtacgtaaacagtagacataaggacttcaaaagtagtgtataaaaacatat |
253 |
Q |
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| T |
1550681 |
ttgcataatataaagagtatgaagtgcgtaaac---agacatgaagacttcaaaagtactgta-aaaaacatat |
1550612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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