View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19744_low_34 (Length: 289)

Name: NF19744_low_34
Description: NF19744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19744_low_34
NF19744_low_34
[»] chr3 (6 HSPs)
chr3 (75-243)||(34705436-34705604)
chr3 (19-74)||(18319605-18319660)
chr3 (19-78)||(46920103-46920162)
chr3 (19-76)||(52126422-52126479)
chr3 (234-280)||(34704856-34704902)
chr3 (19-76)||(11031761-11031818)
[»] chr8 (2 HSPs)
chr8 (19-73)||(11465584-11465638)
chr8 (19-74)||(3428480-3428535)
[»] chr7 (2 HSPs)
chr7 (19-76)||(16850079-16850136)
chr7 (19-72)||(31738973-31739026)
[»] chr4 (5 HSPs)
chr4 (19-76)||(34967090-34967147)
chr4 (19-78)||(54207233-54207292)
chr4 (19-75)||(9117443-9117499)
chr4 (19-74)||(27742873-27742928)
chr4 (198-274)||(18978098-18978174)
[»] chr1 (2 HSPs)
chr1 (19-78)||(38006996-38007055)
chr1 (19-76)||(51083358-51083415)


Alignment Details
Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 75 - 243
Target Start/End: Complemental strand, 34705604 - 34705436
Alignment:
Q  75 cttatgttttatggtttattttgacgcttgaatgatctttgtgtaattgtcatttactctacggtttctgattgtaatatacgaacattgtagtgcttaa 174  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  34705604 cttatgttttatggtttattttgacacttgaatgatccttgtgtaattgtcatttactctaaggtttctgattgtaatatacgaacattgtagtgcttaa 34705505  T
Q  175 tctgtaattaagttttggctttctttggtttgacatcatttaccaccaaaaatctattgtagttgcatt 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34705504 tctgtaattaagttttggctttctttggtttgacatcatttaccaccaaaaatctattgtagttgcatt 34705436  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 18319660 - 18319605
Alignment:
Q  19 cattcccatcctcatattcccaggaataaattttataacctgaaaacaaacacccc 74  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  18319660 cattcccatcctcatattcccaggaataaattttataacctggaaacaaacacccc 18319605  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 46920162 - 46920103
Alignment:
Q  19 cattcccatcctcatattcccaggaataaattttataacctgaaaacaaacaccccctta 78  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  46920162 cattcccatcctcatattcccaggaataaattttataacatggaaacaaacaccccctta 46920103  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 52126422 - 52126479
Alignment:
Q  19 cattcccatcctcatattcccaggaataaattttataacctgaaaacaaacaccccct 76  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  52126422 cattcccatcctcatattccaaggaataaattttataacctggaaacaaacaccccct 52126479  T

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Target: chr3; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 234 - 280
Target Start/End: Complemental strand, 34704902 - 34704856
Alignment:
Q  234 tagttgcattgttattttaataaatttttattgtttttactctgtgc 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  34704902 tagttgcattgttattttaataaatttttattgtttttactctgtgc 34704856  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 11031761 - 11031818
Alignment:
Q  19 cattcccatcctcatattcccaggaataaattttataacctgaaaacaaacaccccct 76  Q
    |||||||||||||||||||| || |||||||||||||||||| |||||||||||||||    
T  11031761 cattcccatcctcatattcctagaaataaattttataacctggaaacaaacaccccct 11031818  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 11465638 - 11465584
Alignment:
Q  19 cattcccatcctcatattcccaggaataaattttataacctgaaaacaaacaccc 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11465638 cattcccatcctcatattcccaggaataaattttataacctgaaaacaaacaccc 11465584  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 3428535 - 3428480
Alignment:
Q  19 cattcccatcctcatattcccaggaataaattttataacctgaaaacaaacacccc 74  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  3428535 cattcccatcctcatatttccaggaataaattttataacctggaaacaaacacccc 3428480  T

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Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 16850079 - 16850136
Alignment:
Q  19 cattcccatcctcatattcccaggaataaattttataacctgaaaacaaacaccccct 76  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  16850079 cattcccatcctcatattcccaggaataaattttataacctggaaacaaacaccccct 16850136  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 31738973 - 31739026
Alignment:
Q  19 cattcccatcctcatattcccaggaataaattttataacctgaaaacaaacacc 72  Q
    ||||||||||||||||||   || |||||||||||||||||| |||||||||||    
T  31738973 cattcccatcctcatattttaagaaataaattttataacctggaaacaaacacc 31739026  T

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Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 34967147 - 34967090
Alignment:
Q  19 cattcccatcctcatattcccaggaataaattttataacctgaaaacaaacaccccct 76  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  34967147 cattcccatcctcatattcccaggaataaattttataacctggaaacaaacaccccct 34967090  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 54207292 - 54207233
Alignment:
Q  19 cattcccatcctcatattcccaggaataaattttataacctgaaaacaaacaccccctta 78  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  54207292 cattcccatcctcatattcctaggaataaattttataacctggaaacaaacaccccctta 54207233  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 9117499 - 9117443
Alignment:
Q  19 cattcccatcctcatattcccaggaataaattttataacctgaaaacaaacaccccc 75  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  9117499 cattcccatcctcatattcctaggaataaattttataacctggaaacaaacaccccc 9117443  T

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Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 27742873 - 27742928
Alignment:
Q  19 cattcccatcctcatattcccaggaataaattttataacctgaaaacaaacacccc 74  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  27742873 cattcccatcctcatattcccaagaataaattttataacctggaaacaaacacccc 27742928  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 198 - 274
Target Start/End: Original strand, 18978098 - 18978174
Alignment:
Q  198 tttggtttgacatcatttaccaccaaaaatctattgtagttgcattgttattttaataaatttttattgtttttact 274  Q
    |||||||||||| || ||||||||||||| || ||||| |||||||||| |||||||| | |||| || ||||||||    
T  18978098 tttggtttgacaccacttaccaccaaaaacctcttgtacttgcattgttgttttaatagagttttcttatttttact 18978174  T

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Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 38007055 - 38006996
Alignment:
Q  19 cattcccatcctcatattcccaggaataaattttataacctgaaaacaaacaccccctta 78  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  38007055 cattcccatcctcatattcctaggaataaattttataacctggaaacaaacaccccctta 38006996  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 51083415 - 51083358
Alignment:
Q  19 cattcccatcctcatattcccaggaataaattttataacctgaaaacaaacaccccct 76  Q
    |||||||||||||||||||| |||||||||||||||||| || |||||||||||||||    
T  51083415 cattcccatcctcatattccaaggaataaattttataacttggaaacaaacaccccct 51083358  T

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