View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19744_low_38 (Length: 259)

Name: NF19744_low_38
Description: NF19744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19744_low_38
NF19744_low_38
[»] chr8 (1 HSPs)
chr8 (10-241)||(39854372-39854602)
[»] chr4 (1 HSPs)
chr4 (23-217)||(21955429-21955622)
[»] scaffold0002 (1 HSPs)
scaffold0002 (51-239)||(466625-466812)
[»] chr5 (1 HSPs)
chr5 (51-239)||(35896108-35896295)
[»] chr3 (2 HSPs)
chr3 (51-239)||(52056034-52056221)
chr3 (51-239)||(53575644-53575831)
[»] chr2 (1 HSPs)
chr2 (51-239)||(30200789-30200976)
[»] chr1 (2 HSPs)
chr1 (51-239)||(31353646-31353833)
chr1 (51-239)||(16990933-16991120)
[»] chr7 (1 HSPs)
chr7 (149-243)||(27143000-27143094)


Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 10 - 241
Target Start/End: Original strand, 39854372 - 39854602
Alignment:
Q  10 catcatcatatgctaaatcaatttcattgcagtgtaattctgaaactttttgttgagatgacaacatatgaattatttcttgcagatgtaaatcatggtt 109  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  39854372 catcatcatatactaaatcaatttcattgcagtgtaattctgaaacttttcgttgagatgacaacatatgaattgtttcttgcagatgtaaatcatggtt 39854471  T
Q  110 atgctcttccacaaattcatgaaccaccannnnnnncaaccacatttttaattcctaatcttgctcgacaattcgttctagtctctagtcttggattgac 209  Q
    |||||||||||||||||||||||||||||       ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39854472 atgctcttccacaaattcatgaaccacca-ttttttcaaccacatttttaagtcctaatcttgctcgacaattcgttctagtctctagtcttggattgac 39854570  T
Q  210 tgttttatgatcatgtttgtctggctttcgta 241  Q
    ||||||| ||||||||||||||||||||||||    
T  39854571 tgttttacgatcatgtttgtctggctttcgta 39854602  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 217
Target Start/End: Complemental strand, 21955622 - 21955429
Alignment:
Q  23 taaatcaatttcattgcagtgtaattctgaaactttttgttgagatgacaacatatgaattatttcttgcagatgtaaatcatggttatgctcttccaca 122  Q
    |||||||||||||||||| || |||| ||| |||||||||||||||||||||||||||| | ||| |   |||||||||||||||||||| || ||  ||    
T  21955622 taaatcaatttcattgcaatgaaattttgatactttttgttgagatgacaacatatgaagtgtttgtgatagatgtaaatcatggttatgttcctctgca 21955523  T
Q  123 aattcatgaaccaccannnnnnncaaccacatttttaattcctaatcttgctcgacaattcgttctagtctctagtcttggattgactgttttat 217  Q
    |||||||| |||||||        |||||||||||||| ||||  | |||||  |||||| |||  ||||||| || ||||||||| ||||||||    
T  21955522 aattcatgcaccaccaatgttgg-aaccacatttttaagtcctggtgttgctttacaatttgttacagtctctggttttggattgattgttttat 21955429  T

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Target: scaffold0002 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 239
Target Start/End: Original strand, 466625 - 466812
Alignment:
Q  51 gaaactttttgttgagatgacaacatatgaattatttcttgcagatgtaaatcatggttatgctcttccacaaattcatgaaccaccannnnnnncaacc 150  Q
    ||||| ||| ||||||| |||||||||||| || ||||| ||| | |||| || ||||| || || |||||||| ||||| |||| ||       || ||    
T  466625 gaaacctttcgttgagacgacaacatatgagttgtttctggcaaaagtaactcgtggttgtggtcctccacaaaatcatgcaccatcaattttc-catcc 466723  T
Q  151 acatttttaattcctaatcttgctcgacaattcgttctagtctctagtcttggattgactgttttatgatcatgtttgtctggctttcg 239  Q
    ||||| |||| |||||| ||||||  |||||| ||||| |||||||||||||||||   |||||||| |||  | ||||||||||||||    
T  466724 acattcttaagtcctaaccttgcttcacaatttgttctggtctctagtcttggattctttgttttataatctcgcttgtctggctttcg 466812  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 239
Target Start/End: Complemental strand, 35896295 - 35896108
Alignment:
Q  51 gaaactttttgttgagatgacaacatatgaattatttcttgcagatgtaaatcatggttatgctcttccacaaattcatgaaccaccannnnnnncaacc 150  Q
    ||||| ||| ||||||| |||||||||||| || ||||| ||| | |||| || ||||| || || |||||||| ||||| |||| ||       || ||    
T  35896295 gaaacctttcgttgagacgacaacatatgagttgtttctggcaaaagtaactcgtggttgtggtcctccacaaaatcatgcaccatcaattttc-catcc 35896197  T
Q  151 acatttttaattcctaatcttgctcgacaattcgttctagtctctagtcttggattgactgttttatgatcatgtttgtctggctttcg 239  Q
    ||||| |||| |||||| ||||||  |||||| ||||| |||||||||||||||||   |||||||| |||  | ||||||||||||||    
T  35896196 acattcttaagtcctaaccttgcttcacaatttgttctggtctctagtcttggattctttgttttataatctcgcttgtctggctttcg 35896108  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 239
Target Start/End: Original strand, 52056034 - 52056221
Alignment:
Q  51 gaaactttttgttgagatgacaacatatgaattatttcttgcagatgtaaatcatggttatgctcttccacaaattcatgaaccaccannnnnnncaacc 150  Q
    ||||| ||| ||||||| |||||||||||| || ||||| ||| | |||| || ||||| || || |||||||| ||||| |||| ||       || ||    
T  52056034 gaaacctttcgttgagacgacaacatatgagttgtttctggcaaaagtaactcgtggttgtggtcctccacaaaatcatgcaccatcaattttc-catcc 52056132  T
Q  151 acatttttaattcctaatcttgctcgacaattcgttctagtctctagtcttggattgactgttttatgatcatgtttgtctggctttcg 239  Q
    ||||| |||| |||||| ||||||  |||||| ||||| |||||||||||||||||   |||||||| |||  | ||||||||||||||    
T  52056133 acattcttaagtcctaaccttgcttcacaatttgttctggtctctagtcttggattctttgttttataatctcgcttgtctggctttcg 52056221  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 239
Target Start/End: Original strand, 53575644 - 53575831
Alignment:
Q  51 gaaactttttgttgagatgacaacatatgaattatttcttgcagatgtaaatcatggttatgctcttccacaaattcatgaaccaccannnnnnncaacc 150  Q
    ||||| ||| ||||||| |||||||||||| || ||||| ||| | |||| || ||||| || || |||||||| ||||| |||| ||       || ||    
T  53575644 gaaacctttcgttgagacgacaacatatgagttgtttctggcaaaagtaactcgtggttgtggtcctccacaaaatcatgcaccatcaattttc-catcc 53575742  T
Q  151 acatttttaattcctaatcttgctcgacaattcgttctagtctctagtcttggattgactgttttatgatcatgtttgtctggctttcg 239  Q
    ||||| |||| |||||| ||||||  |||||| ||||| |||||||||||||||||   |||||||| |||  | ||||||||||||||    
T  53575743 acattcttaagtcctaaccttgcttcacaatttgttctggtctctagtcttggattctttgttttataatctcgcttgtctggctttcg 53575831  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 239
Target Start/End: Original strand, 30200789 - 30200976
Alignment:
Q  51 gaaactttttgttgagatgacaacatatgaattatttcttgcagatgtaaatcatggttatgctcttccacaaattcatgaaccaccannnnnnncaacc 150  Q
    ||||| ||| ||||||| |||||||||||| || ||||| ||| | |||| || ||||| || || |||||||| ||||| |||| ||       || ||    
T  30200789 gaaacctttcgttgagacgacaacatatgagttgtttctggcaaaagtaactcgtggttgtggtcctccacaaaatcatgcaccatcaattttc-catcc 30200887  T
Q  151 acatttttaattcctaatcttgctcgacaattcgttctagtctctagtcttggattgactgttttatgatcatgtttgtctggctttcg 239  Q
    ||||| |||| |||||| ||||||  |||||| ||||| |||||||||||||||||   |||||||| |||  | ||||||||||||||    
T  30200888 acattcttaagtcctaaccttgcttcacaatttgttctggtctctagtcttggattctttgttttataatctcgcttgtctggctttcg 30200976  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 239
Target Start/End: Complemental strand, 31353833 - 31353646
Alignment:
Q  51 gaaactttttgttgagatgacaacatatgaattatttcttgcagatgtaaatcatggttatgctcttccacaaattcatgaaccaccannnnnnncaacc 150  Q
    ||||| ||| ||||||| |||||||||||| || ||||| ||| | |||| || ||||| || || |||||||| ||||| |||| ||       || ||    
T  31353833 gaaacctttcgttgagacgacaacatatgagttgtttctggcaaaagtaactcgtggttgtggtcctccacaaaatcatgcaccatcaattttc-catcc 31353735  T
Q  151 acatttttaattcctaatcttgctcgacaattcgttctagtctctagtcttggattgactgttttatgatcatgtttgtctggctttcg 239  Q
    ||||| |||| |||||| ||||||  |||||| ||||| |||||||||||||||||   |||||||| |||  | ||||||||||||||    
T  31353734 acattcttaagtcctaaccttgcttcacaatttgttctggtctctagtcttggattctttgttttataatctcgcttgtctggctttcg 31353646  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 239
Target Start/End: Complemental strand, 16991120 - 16990933
Alignment:
Q  51 gaaactttttgttgagatgacaacatatgaattatttcttgcagatgtaaatcatggttatgctcttccacaaattcatgaaccaccannnnnnncaacc 150  Q
    ||||| ||| ||||||| |||||||||||| || ||||| ||| | |||| || ||||| || || |||||||| ||||| |||| ||       || ||    
T  16991120 gaaacctttcgttgagacgacaacatatgagttgtttctggcaaaagtaactcgtggttgtggtcctccacaaaatcatgcaccatcaattttc-catcc 16991022  T
Q  151 acatttttaattcctaatcttgctcgacaattcgttctagtctctagtcttggattgactgttttatgatcatgtttgtctggctttcg 239  Q
    ||||| |||| |||||| |||| |  |||||| ||||| |||||||||||||||||   |||||||| |||  | ||||||||||||||    
T  16991021 acattcttaagtcctaaccttgtttcacaatttgttctggtctctagtcttggattctttgttttataatctcgcttgtctggctttcg 16990933  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 243
Target Start/End: Complemental strand, 27143094 - 27143000
Alignment:
Q  149 ccacatttttaattcctaatcttgctcgacaattcgttctagtctctagtcttggattgactgttttatgatcatgtttgtctggctttcgtatg 243  Q
    ||||||| |||| || ||||||||||  |||||| ||||| || |||||||||| |||   ||||||||||||  | |||| |||||||||||||    
T  27143094 ccacattcttaagtcataatcttgcttcacaatttgttctggtttctagtcttgaattctttgttttatgatctcgcttgtttggctttcgtatg 27143000  T

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