View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19744_low_4 (Length: 505)
Name: NF19744_low_4
Description: NF19744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19744_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-134; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 11861762 - 11861356
Alignment:
| Q |
1 |
ataataatcaaagtatttagagactcaagcttttccattcctttgggcagagaacctaactttctgcattcagaaagaaccagtttttcaagtgaagtta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
11861762 |
ataataatcaaagtatttagagactcaagcttttccattcctttgggcagagaatctaactttctgcattcagaaagaaccagtttttcaagtgaagtga |
11861663 |
T |
|
| Q |
101 |
ggttacctatactttctggtaaagaagttaaaccatggcaatcataaatccttaagtcttccaaagttttcacgttttcaggtccccatggaagggtctt |
200 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||| ||||| |||||| |||||||||||||| ||| |
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| T |
11861662 |
ggttacctatactttctggtaaaaaagttaaaccatgacaatcataaatccttaagtctttcaaagtgttcacattttcaactccccatggaagggactt |
11861563 |
T |
|
| Q |
201 |
cagttttggaatactccttaacgtaagagaacgaagatttttcagaccctcccattcagttccagcgaatttgtcaatgtcaaaaacaagttgttcacat |
300 |
Q |
| |
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|||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||| || | || | |||||| | |||||| || |||| |
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| T |
11861562 |
aagttttggaatactccttaatgtaagagaacgaaggtttttcagaccctcccactcattt-----ggatgt----ttgtcaagatcaagttcttgacat |
11861472 |
T |
|
| Q |
301 |
ttttcaatagaaagtgatgtgagtgaactcaaagacttaaaaccttgtggcagagacgttaaattaaaacaatctctaatgtgaagttccttaagtgaaa |
400 |
Q |
| |
|
||||||||| |||| | |||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
11861471 |
ctttcaatagtgagtgtttggagtgaactcaaagacttgaaaccttgtggtagagacgctaaattaaaacaatctctaatgtgaagttcctcaagtgaaa |
11861372 |
T |
|
| Q |
401 |
tgaggttttcgagcca |
416 |
Q |
| |
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||| ||||| |||||| |
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| T |
11861371 |
tgaagtttttgagcca |
11861356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 11829663 - 11829222
Alignment:
| Q |
1 |
ataataatcaaagtatttagagactcaagcttttccattcctttgggcagagaacctaactttctgcattcagaaagaaccagtttttcaagtgaagtta |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||||||||||| |||||| |||| |||||||||||||||||||||||| ||||||||||||| | |
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|
| T |
11829663 |
ataataatcaaagtatttagagactgaagcatttccattcctttgggaagagaatctaaatttctgcattcagaaagaaccagtctttcaagtgaagtga |
11829564 |
T |
|
| Q |
101 |
ggttacctatactttctggtaaagaagttaaaccatggcaatcataaatccttaagtcttccaaagttttcacgttttcaggtccccatggaagggtctt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||| ||| |
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| T |
11829563 |
ggttacctatactttctggtaaagaagttaaaccatgacaatcataaatcctcaagtctttcaaagttttcacgttttcaactccccatggaagggactt |
11829464 |
T |
|
| Q |
201 |
cagttttggaatactccttaacgtaagagaacgaagatttttcagaccctcccatt------------------cagttccagcgaatttgtcaatgtca |
282 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||| ||||||||||||||||||| ||||||| ||| ||||||||||||| |
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|
| T |
11829463 |
cagttttggaatactccttaatgtaagagattgaaggtttttcagaccctcccattcagtcagaccatcccattcagttccggcggatttgtcaatgtcc |
11829364 |
T |
|
| Q |
283 |
aaaacaagttgttcacatttttcaatagaaagtgatgtgagtgaactcaaagacttaaaaccttgtggcagagacgttaaattaaaacaatctctaatgt |
382 |
Q |
| |
|
| |||||||||||||||| ||||||||||||||||| ||||||| || ||| |||| ||||||||||| |||||| ||| |||||||||||||||||| |
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|
| T |
11829363 |
agaacaagttgttcacatctttcaatagaaagtgatatgagtgagcttaaaaacttgaaaccttgtggtagagactccaaaataaaacaatctctaatgt |
11829264 |
T |
|
| Q |
383 |
gaagttccttaagtgaaatgaggttttcgagccaactctctg |
424 |
Q |
| |
|
||||||||| ||||||||||| ||||| ||||||||||||| |
|
|
| T |
11829263 |
gaagttcctcaagtgaaatgaagtttttaagccaactctctg |
11829222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 1 - 400
Target Start/End: Original strand, 11900756 - 11901146
Alignment:
| Q |
1 |
ataataatcaaagtatttagagactcaagcttttccattcctttgggcagagaacctaactttctgcattcagaaagaaccagtttttcaagtgaagtta |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||| || ||||||||| || |||| |||||||||||||||| ||| ||||| |||| ||||| | |
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|
| T |
11900756 |
ataataatcaaagtatttagagactgtagcatttccatccccttgggcagataatctaaatttctgcattcagaaataactagtttgccaagggaagtga |
11900855 |
T |
|
| Q |
101 |
ggttacctatactttctggtaaagaagttaaaccatggcaatcataaatccttaagtcttccaaagttttcacgttttcaggtccccatggaagggtctt |
200 |
Q |
| |
|
|||||||||| ||||||| || ||||| ||||||||||||||||| |||||| || | ||||| |||| ||||||| | ||| |||||||| ||| |
|
|
| T |
11900856 |
ggttacctatgctttctgttaggtcagttagaccatggcaatcataaagccttaaatcatgcaaagagttcaagttttcaatttcccttggaagggactt |
11900955 |
T |
|
| Q |
201 |
cagttttggaatactccttaacgtaagagaacgaagatttttcagaccctcccattcagttccagcgaatttgtcaatgtcaaaaacaagttgttcacat |
300 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||| ||| ||||||||| |||||||||||| | | ||||| | | |||||| ||||||| |
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|
| T |
11900956 |
gagtttgggaatactccttaatgtaagagaacgaagctttctcagacccttccattcagttccggag---------atgtcgagatcaagttcttcacat |
11901046 |
T |
|
| Q |
301 |
ttttcaatagaaagtgatgtgagtgaactcaaagacttaaaaccttgtggcagagacgttaaattaaaacaatctctaatgtgaagttccttaagtgaaa |
400 |
Q |
| |
|
| ||||||| |||||| ||||||||||||||||||| ||||||||||| | |||| ||||| ||| ||||||||||||||||||||||| ||| |||| |
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|
| T |
11901047 |
ctctcaatagtgagtgatatgagtgaactcaaagacttgaaaccttgtggtaaagactttaaaataacacaatctctaatgtgaagttcctcaagcgaaa |
11901146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 2 - 409
Target Start/End: Complemental strand, 12040556 - 12040158
Alignment:
| Q |
2 |
taataatcaaagtatttagagactcaagcttttccattcctttgggcagagaacctaactttctgcattcagaaagaaccagtttttcaagtgaagttag |
101 |
Q |
| |
|
||||||||||||| |||||||||| ||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
12040556 |
taataatcaaagtctttagagactgtagcgtttccattcctttgggcagagaatctaactttctgcattccgaaagaaccagtttttcaagtgaagcgaa |
12040457 |
T |
|
| Q |
102 |
gttacctatactttctggtaaagaagttaaaccatggcaatcataaatccttaagtcttccaaagttttcacgttttcaggtccccatggaagggtcttc |
201 |
Q |
| |
|
||| | ||| ||||| || | |||||||||||| ||||||||||||| ||||||| ||| |||| ||||| | || |||| ||||||| ||| |
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|
| T |
12040456 |
gttgcatatgctttccgggagagaagttaaaccctggcaatcataaagccttaagacttgtaaagagttcacaatctcgaatccctgaggaagggacttg |
12040357 |
T |
|
| Q |
202 |
agttttggaatactccttaacgtaagagaacgaagatttttcagaccctcccattcagttccagcgaatttgtcaatgtcaaaaacaagttgttcacatt |
301 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||| ||| ||||||||||||| ||| || | | | |||| | ||||||||| |||| |
|
|
| T |
12040356 |
agatttggaatactccttaatgtaagagaacgaaggtttatcagaccctcccactcatttggggagga---------ctcaagatcaagttgttgacatc |
12040266 |
T |
|
| Q |
302 |
tttcaatagaaagtgatgtgagtgaactcaaagacttaaaaccttgtggcagagacgttaaattaaaacaatctctaatgtgaagttccttaagtgaaat |
401 |
Q |
| |
|
||||||||| |||| | |||||||||||||||| ||||||| || |||||| | |||| |||||||||| |||||||||||||||||||||||| |
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|
| T |
12040265 |
tttcaatagtgagtgtttcgagtgaactcaaagaccggaaaccttcaggtagagacttcaaatggaaacaatctcgaatgtgaagttccttaagtgaaat |
12040166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 36 - 230
Target Start/End: Complemental strand, 11733417 - 11733223
Alignment:
| Q |
36 |
cattcctttgggcagagaacctaactttctgcattcagaaagaaccagtttttcaagtgaagttaggttacctatactttctggtaaagaagttaaacca |
135 |
Q |
| |
|
||||||||||||||||||| | | |||||||||||||||||||||||| ||||||||| || || |||| ||||||||||| |||||||| | |
|
|
| T |
11733417 |
cattcctttgggcagagaatccatacttctgcattcagaaagaaccagttcacgaagtgaagtgagattgtctatggtttctggtaaatgagttaaacta |
11733318 |
T |
|
| Q |
136 |
tggcaatcataaatccttaagtcttccaaagttttcacgttttcaggtccccatggaagggtcttcagttttggaatactccttaacgtaagaga |
230 |
Q |
| |
|
||||||||||||||||||| |||| ||| | ||||| |||| || ||| | || ||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
11733317 |
gggcaatcataaatccttaaatctttcaatgatttcaagtttccaaatccgcgtgtaagggtcactagttttggaatactccttaaagtaagaga |
11733223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 430 - 484
Target Start/End: Complemental strand, 11829096 - 11829042
Alignment:
| Q |
430 |
acgttcgactccaccagaacgagctcatcatcaagaccgggatatagcggcatgc |
484 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
11829096 |
acgttcgactccaccagaacgagctcatcatcaagaccgggatagagcagcatgc |
11829042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 434 - 483
Target Start/End: Complemental strand, 11861224 - 11861175
Alignment:
| Q |
434 |
tcgactccaccagaacgagctcatcatcaagaccgggatatagcggcatg |
483 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11861224 |
tcgactccaccacaacgagctcatcatcaagaccgggatatagtggcatg |
11861175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 430 - 484
Target Start/End: Original strand, 11901284 - 11901338
Alignment:
| Q |
430 |
acgttcgactccaccagaacgagctcatcatcaagaccgggatatagcggcatgc |
484 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||| |||||||| ||||||| |
|
|
| T |
11901284 |
acgttcgactccacaagaacaagctcatcatcaagaccaggatatagaggcatgc |
11901338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 430 - 484
Target Start/End: Complemental strand, 12040017 - 12039963
Alignment:
| Q |
430 |
acgttcgactccaccagaacgagctcatcatcaagaccgggatatagcggcatgc |
484 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
12040017 |
acgtttgactccaccagaacgagctcatcatcaagattaggatatagtggcatgc |
12039963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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