View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19744_low_46 (Length: 250)
Name: NF19744_low_46
Description: NF19744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19744_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 27 - 247
Target Start/End: Complemental strand, 47348981 - 47348761
Alignment:
| Q |
27 |
atttttatgttgagtcgattcattgaaaactgtactctaatttcaattgaacctaagctatacgacttgatggatccaaattaatcaatgtttaggttgt |
126 |
Q |
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| T |
47348981 |
atttttatgttgagtcgattcattgaaaactgtactctaatttcaattgaacctacgctatacgacttgatggatccaaattaatcaatgtttaggttgg |
47348882 |
T |
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| Q |
127 |
acaccgagttttcaagaatnnnnnnntatatgaaataaaatatgcgagtaaatatgtaagtaaactcctcaaacaaagacacactactcaattatttgtg |
226 |
Q |
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| T |
47348881 |
acatcgagttttcaagaataaaaaaatatatgaaataaaatatgtgagtaaatatgtaagtaaactcctcaaacaaagacacactactcaattatttgtg |
47348782 |
T |
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| Q |
227 |
tccattcctttttcccatatt |
247 |
Q |
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| T |
47348781 |
tccattccttcttcccatatt |
47348761 |
T |
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