View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19744_low_48 (Length: 249)
Name: NF19744_low_48
Description: NF19744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19744_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 31180626 - 31180868
Alignment:
| Q |
1 |
acatttttcagcatgagcagtttacatgccccaacaaatgtgtaagaaccagaaaaagatttacgaaaataccacaacagcagaatctaaacgacagcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31180626 |
acatttttcagcatgagcagtttacatgccccaacaaatgtgtaagaaccagaaaaagatttacgaaaataccacaacagcagaatctaaacgacagcaa |
31180725 |
T |
|
| Q |
101 |
gtttaatgttaaaggataacaannnnnnnnnnnnnnaaatattagatggtagtaacaaattaaattcaatagaattccagttctacctgataacctgtca |
200 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31180726 |
gtttaatgttaaaggataacaatttttaatttttttaaatattagatggtagtaacaaattaaattcaatagaattccagttctacctgataacctgtca |
31180825 |
T |
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| Q |
201 |
gcccaatcttctctaaaatcattttgcacgattcctttgcttc |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31180826 |
gcccaatcttctctaaaatcattttgcacgattccttttcttc |
31180868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 31003151 - 31003398
Alignment:
| Q |
1 |
acatttttcagcatgagcagtttacatgcccca-acaaatgtgtaagaaccagaaaaagattt-acgaaaatacca-caacagcagaatctaaacgacag |
97 |
Q |
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||||||||||||||||||||||||||||||| |||||||| ||||||||||| | ||| || ||||||| | ||||||||||||||||||||||| |
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| T |
31003151 |
acatttttcagcatgagcagtttacatgccctttacaaatgtttaagaaccagattttgtttttaccaaaatactaacaacagcagaatctaaacgacag |
31003250 |
T |
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| Q |
98 |
caagtttaatgttaaaggataacaannnnnnnnnnnnnn--aaatattagatggtagtaacaaattaaattcaatagaattccagttctacctgataacc |
195 |
Q |
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|||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31003251 |
caagtttaatgttacaggataaatatatatatatattttttaaatattagatggtagtaacaaattaaattcaatagaattccagttctacctgataacc |
31003350 |
T |
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| Q |
196 |
tgtcagcccaatcttctctaaaatcattttgcacgattcctttgcttc |
243 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
31003351 |
tgtcagcccaatcttctctaaaatcattttacacgattccttttcttc |
31003398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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