View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19744_low_52 (Length: 236)
Name: NF19744_low_52
Description: NF19744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19744_low_52 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 5639096 - 5639311
Alignment:
| Q |
1 |
atgataaagcgatgtgcataaccaagtgattggttgatgatgccttctcatccatttccctgctctaatatctgtatgttttcaaccttggcagcgattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5639096 |
atgataaagcgatgtgcataaccaagtgattggttgatgatgccttctcatccatttccctgctctaatatctgtatgttttcaaccttggcagcgattg |
5639195 |
T |
|
| Q |
101 |
agtagctctggctatgtcttttctgcttctttacctccatatcttgcaagtgctgccattacagctattgacgtccttgaggaaaatcccaatctattaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5639196 |
agtagctctggctatgtcttttctgcttctttacctccatatcttgcaagtgctgccattacagctattgacgtccttgaggaaaatcccaatctattaa |
5639295 |
T |
|
| Q |
201 |
caaaattgaagaacaa |
216 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
5639296 |
caaaattgaagaacaa |
5639311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 30 - 221
Target Start/End: Original strand, 22965335 - 22965526
Alignment:
| Q |
30 |
ttggttgatgatgccttctcatccatttccctgctctaatatctgtatgttttcaaccttggcagcgattgagtagctctggctatgtcttttctgcttc |
129 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22965335 |
ttggttgataatgccttctcatccatttcccttctctaatatctttatgttttcaaatttggcagcgattgagtagctctggctatgtcttttctgcttc |
22965434 |
T |
|
| Q |
130 |
tttacctccatatcttgcaagtgctgccattacagctattgacgtccttgaggaaaatcccaatctattaacaaaattgaagaacaacattg |
221 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||| |
|
|
| T |
22965435 |
tttgcctccatatcttgcaagtgctgccattacaactattgacgtccttgaggaaaatcccaatctattagcaaagttgaagagcaacattg |
22965526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 38954611 - 38954397
Alignment:
| Q |
1 |
atgataaagcgatgtgcataaccaagtgattggttgatgatgccttctcatccatttccctgctctaatatctgtatgttttcaaccttggcagcgattg |
100 |
Q |
| |
|
||||| |||||||||||||||| | ||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
38954611 |
atgattaagcgatgtgcataacttacatcttggttgataatgccttctcatccatttcccttctctaatatctttatgttttcaaatttggcagcgatat |
38954512 |
T |
|
| Q |
101 |
agtagctctggctatgtcttttctgcttctttacctccatatcttgcaagtgctgccattacagctattgacgtccttgaggaaaatcccaatctattaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38954511 |
------tctggctatgtcttttctgcttctttgcctccatatcttgcaagtgctgccattacagctattgacgtccttgaggaaaatcccaatctattag |
38954418 |
T |
|
| Q |
201 |
caaaattgaagaacaacattg |
221 |
Q |
| |
|
|||| ||||||| |||||||| |
|
|
| T |
38954417 |
caaagttgaagagcaacattg |
38954397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 77 - 221
Target Start/End: Complemental strand, 21423032 - 21422888
Alignment:
| Q |
77 |
tgttttcaaccttggcagcgattgagtagctctggctatgtcttttctgcttctttacctccatatcttgcaagtgctgccattacagctattgacgtcc |
176 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||| |||| |
|
|
| T |
21423032 |
tgttttcaacttttacagcgattgagtagctctggctacgtcttttctgcttctttgcctccatatcttgcaagcgctgcaattacagctattgatgtcc |
21422933 |
T |
|
| Q |
177 |
ttgaggaaaatcccaatctattaacaaaattgaagaacaacattg |
221 |
Q |
| |
|
|||| |||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
21422932 |
ttgacgaaaatcccaatgtattaacaaagttgaagaacaacattg |
21422888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 92 - 221
Target Start/End: Complemental strand, 30634231 - 30634102
Alignment:
| Q |
92 |
cagcgattgagtagctctggctatgtcttttctgcttctttacctccatatcttgcaagtgctgccattacagctattgacgtccttgaggaaaatccca |
191 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||| |||||||| |||||||||| |
|
|
| T |
30634231 |
cagcgattgagcagctctggctacgtcttttctgcttctttgcctccatatcttgcaagcgctgcaattacagctattgatgtccttgacgaaaatccca |
30634132 |
T |
|
| Q |
192 |
atctattaacaaaattgaagaacaacattg |
221 |
Q |
| |
|
|| |||||||||| |||||||||||||||| |
|
|
| T |
30634131 |
atatattaacaaagttgaagaacaacattg |
30634102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University