View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19744_low_53 (Length: 236)
Name: NF19744_low_53
Description: NF19744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19744_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 47746252 - 47746032
Alignment:
| Q |
1 |
cttaattacctgttcttgttccaagacagagatcaatatatcacaatgacaattgtatctagcaagctattattttccctttactcttttctccttttta |
100 |
Q |
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| T |
47746252 |
cttaattacctgttcttgttccaagacagagatcaatatatcacaatgacaattgtatctagcaagctattattttccctttactcttttctccttttta |
47746153 |
T |
|
| Q |
101 |
ttatcattatcgtatctcaagcccaaggccaaccaaattttttgcgcaactattgtataaacaataatggcaactacacagccaatagcacctatcaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47746152 |
ttatcattatcgtatctcaagcccaaggccaaccaaattttttgcgcaactattgtataaacaataatggcaactacacagccaatagcacctatcaaaa |
47746053 |
T |
|
| Q |
201 |
caacctcaacacccttttatc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
47746052 |
caacctcaacacccttttatc |
47746032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 47713669 - 47713449
Alignment:
| Q |
1 |
cttaattacctgttcttgttccaagacagagatcaatatatcacaatgacaattgtatctagcaagctattattttccctttactcttttctccttttta |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
47713669 |
cttaataacctgttcttgttccaagacagagatcaatatatcagaatgacaattgtttctagcaagctattattttccttttactcttttctccttttta |
47713570 |
T |
|
| Q |
101 |
ttatcattatcgtatctcaagcccaaggccaaccaaattttttgcgcaactattgtataaacaataatggcaactacacagccaatagcacctatcaaaa |
200 |
Q |
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| T |
47713569 |
ttatcattatcgtatctcaagcccagggccaaccagattttgtgcgctactcttgtataaacaataatggcaactacacagccaatagcacctatcaaaa |
47713470 |
T |
|
| Q |
201 |
caacctcaacacccttttatc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
47713469 |
caacctcaacacccttttatc |
47713449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 47718460 - 47718246
Alignment:
| Q |
1 |
cttaattacctgttcttgttccaagacagagatcaatatatcac-aatgacaattgtatctagcaagctattattttccctttactcttttctccttttt |
99 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||| ||||||||||||||||||||| |||| ||| |||| |||| |
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| T |
47718460 |
cttaattacctgttcttgttccaagacagagatcaatata-cacgaatgacaactgtttctagcaagctattattttccttttattctgttct---tttt |
47718365 |
T |
|
| Q |
100 |
attatcattatcgtatctcaagcccaaggccaaccaaattttttgcgcaactattgtataaacaataatggcaactacacagccaatagcacctatcaaa |
199 |
Q |
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| T |
47718364 |
attatcattatcgtatctcaagcccaaggccaaccaaattttttgcgcaactattgtataaacaataatggcaactacacagccaatagcacctatcaaa |
47718265 |
T |
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| Q |
200 |
acaacctcaacaccctttt |
218 |
Q |
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||||||||| ||||||||| |
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| T |
47718264 |
acaacctcagcaccctttt |
47718246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 112 - 218
Target Start/End: Complemental strand, 47760473 - 47760367
Alignment:
| Q |
112 |
gtatctcaagcccaaggccaaccaaattttttgcgcaactattgtataaacaataatggcaactacacagccaatagcacctatcaaaacaacctcaaca |
211 |
Q |
| |
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|||||||||||| ||| |||||| ||||| || ||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47760473 |
gtatctcaagccaaagcccaacctgattttctgtacaacttttgtaaaaacgataatggcaactacacagccaatagcacctatcaaaacaacctcaaca |
47760374 |
T |
|
| Q |
212 |
ccctttt |
218 |
Q |
| |
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|| |||| |
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|
| T |
47760373 |
ccgtttt |
47760367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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