View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19744_low_55 (Length: 235)
Name: NF19744_low_55
Description: NF19744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19744_low_55 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 16 - 181
Target Start/End: Original strand, 55202667 - 55202834
Alignment:
| Q |
16 |
gaaagcgccctaagcacatccataaccatatcaaccatattttccctattaagctcattcaaacgatcaagcacaatgagttt--cacattgttatcact |
113 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
55202667 |
gaaaacgccctaagcacatccataaccatatcaaccataatttccctattaagctcattcaaacgatcaagcacaatgagtttttcacattgttatcact |
55202766 |
T |
|
| Q |
114 |
cttggaagaaagtaataactgacaataagtagtagcagcaactttaattgcattaggtgtagaactaa |
181 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
55202767 |
cttggaagaaagtaataactgacaataagtagtggcagtaactttaattgcattaggtgtagaactaa |
55202834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 222
Target Start/End: Complemental strand, 1472070 - 1471863
Alignment:
| Q |
21 |
cgccctaagcacatccataaccatatcaaccatattttccctatta---------agctcattcaaacgatcaagcacaatgagtttcacattgttatca |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||| ||||| || | |||||||||||||| || ||||||||||||||| |
|
|
| T |
1472070 |
cgccctaagcacatccataaccatatcaaccataatctccctattatccctcttaagctcgttaagccgatcaagcacaataagcttcacattgttatca |
1471971 |
T |
|
| Q |
112 |
ctcttggaagaaagtaataactgacaataagtagtagcagcaactttaattgcattaggtgtagaactaaccaaaacaagtgtaccagcacattcataaa |
211 |
Q |
| |
|
|||| |||||| |||||||||||||||||| | ||||| ||||||| || | |||| |||||||| | ||||||| ||||||||||||||||||| |
|
|
| T |
1471970 |
ctctg---agaaagcaataactgacaataagtattcgcagccgctttaatcgcggttggtgcagaactaagcgaaacaagcgtaccagcacattcataaa |
1471874 |
T |
|
| Q |
212 |
caacagaagta |
222 |
Q |
| |
|
|||||| |||| |
|
|
| T |
1471873 |
caacagcagta |
1471863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 46467160 - 46466957
Alignment:
| Q |
17 |
aaagcgccctaagcacatccataaccatatcaaccatattttcccta---------ttaagctcattcaaacgatcaagcacaatgagtttcacattgtt |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| | |||||| |||||||| || | ||||||||||||||| |||||||||||||| |
|
|
| T |
46467160 |
aaagtgccctaagcacatccataaccatatcaaccataatctccctattatacctcttaagctcgttaagacgatcaagcacaataagtttcacattgtt |
46467061 |
T |
|
| Q |
108 |
atcactcttggaagaaagtaataactgacaataagtagtagcagcaactttaattgcattaggtgtagaactaaccaaaacaagtgtaccagcacattca |
207 |
Q |
| |
|
|||||| | ||||| || |||| |||||||| | |||||||| ||| ||||||| |||||| || ||| ||||||||| ||||||||||||| |
|
|
| T |
46467060 |
atcactat---gagaaatcaacaacttacaataagcactagcagcagcttcaattgcagtaggtgcag---taagtgaaacaagtgcaccagcacattca |
46466967 |
T |
|
| Q |
208 |
taaacaacag |
217 |
Q |
| |
|
|||||||||| |
|
|
| T |
46466966 |
taaacaacag |
46466957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University