View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19744_low_61 (Length: 227)

Name: NF19744_low_61
Description: NF19744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19744_low_61
NF19744_low_61
[»] chr4 (4 HSPs)
chr4 (99-224)||(48603426-48603550)
chr4 (24-103)||(48603062-48603141)
chr4 (170-203)||(52934399-52934432)
chr4 (120-202)||(44124049-44124131)
[»] chr7 (2 HSPs)
chr7 (120-202)||(30588144-30588226)
chr7 (122-202)||(15013677-15013756)
[»] chr8 (2 HSPs)
chr8 (152-198)||(36638245-36638291)
chr8 (152-200)||(6890638-6890686)
[»] chr5 (1 HSPs)
chr5 (120-202)||(4524035-4524117)
[»] chr6 (2 HSPs)
chr6 (157-202)||(28011844-28011889)
chr6 (170-202)||(21813913-21813945)
[»] chr3 (5 HSPs)
chr3 (120-197)||(11065316-11065393)
chr3 (161-202)||(39436090-39436131)
chr3 (146-199)||(49215586-49215639)
chr3 (170-202)||(42314174-42314206)
chr3 (170-202)||(52259345-52259377)
[»] scaffold0006 (1 HSPs)
scaffold0006 (170-202)||(109404-109436)
[»] chr1 (1 HSPs)
chr1 (170-202)||(13684285-13684317)


Alignment Details
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 99 - 224
Target Start/End: Original strand, 48603426 - 48603550
Alignment:
Q  99 tttaaaatcaacattgaatataatgcatttatacataaa-gggtagtatagtagtagttacacattttttaaacaaatttattactccaacaaattttct 197  Q
    |||||||| |||||||||||||||||||||||||||||| ||||| ||||||| || |  || |||||||||||||||||||||||||||||||||||||    
T  48603426 tttaaaattaacattgaatataatgcatttatacataaaagggtaatatagtaataat--catattttttaaacaaatttattactccaacaaattttct 48603523  T
Q  198 taataagtactagtatatttgtttaac 224  Q
    ||||||||| || || |||||||||||    
T  48603524 taataagtattactaaatttgtttaac 48603550  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 24 - 103
Target Start/End: Original strand, 48603062 - 48603141
Alignment:
Q  24 cacccacaagactgagctaagttcttctttaacccattcgggtgatcttatttgccgattcaaactgcctgttagtttaa 103  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48603062 cacccacaagactgagttaagttcttcttcaacccattcgggtgatcttatttgccgattcaaactgcctgttagtttaa 48603141  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 203
Target Start/End: Complemental strand, 52934432 - 52934399
Alignment:
Q  170 acaaatttattactccaacaaattttcttaataa 203  Q
    ||||||||||||||||||||||||||||||||||    
T  52934432 acaaatttattactccaacaaattttcttaataa 52934399  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 202
Target Start/End: Original strand, 44124049 - 44124131
Alignment:
Q  120 aatgcatttatacataaagggtagtatagtagtagttacacattttttaaacaaatttattactccaacaaattttcttaata 202  Q
    |||||||||||||| |||||| | | ||||| || | | |||||||| | ||| ||||||| ||||||||| |||||||||||    
T  44124049 aatgcatttatacaaaaagggcaatttagtaataataatacatttttcagacatatttattgctccaacaacttttcttaata 44124131  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 120 - 202
Target Start/End: Complemental strand, 30588226 - 30588144
Alignment:
Q  120 aatgcatttatacataaagggtagtatagtagtagttacacattttttaaacaaatttattactccaacaaattttcttaata 202  Q
    |||| |||||| ||||||||| | | ||||| |||| |||||| ||| ||| |||||||||||| |||||| |||||||||||    
T  30588226 aatggatttatgcataaagggcaatttagtaatagtaacacatatttcaaataaatttattacttcaacaacttttcttaata 30588144  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 202
Target Start/End: Original strand, 15013677 - 15013756
Alignment:
Q  122 tgcatttatacataaagggtagtatagtagtagttacacattttttaaacaaatttattactccaacaaattttcttaata 202  Q
    |||||||||| |||||||| | | ||||| |||| ||| |||||  ||||||||||||| ||||||||| |||| ||||||    
T  15013677 tgcatttataaataaagggcaatttagtaatagtcacatattttc-aaacaaatttattgctccaacaactttttttaata 15013756  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 198
Target Start/End: Original strand, 36638245 - 36638291
Alignment:
Q  152 tagttacacattttttaaacaaatttattactccaacaaattttctt 198  Q
    ||||||||||||||| |||||||| |||||||||||||  |||||||    
T  36638245 tagttacacatttttcaaacaaatgtattactccaacatcttttctt 36638291  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 6890638 - 6890686
Alignment:
Q  152 tagttacacattttttaaacaaatttattactccaacaaattttcttaa 200  Q
    |||||||||| |||| | | ||||||||||||||||||| |||||||||    
T  6890638 tagttacacacttttcacataaatttattactccaacaatttttcttaa 6890686  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 202
Target Start/End: Original strand, 4524035 - 4524117
Alignment:
Q  120 aatgcatttatacataaagggtagtatagtagtagttacacattttttaaacaaatttattactccaacaaattttcttaata 202  Q
    |||||||||||  | ||||| || | ||||| |||| |||||  ||| | ||||||||||||||||||||| |||||||||||    
T  4524035 aatgcatttatctacaaaggataatttagtaatagtcacacacatttcagacaaatttattactccaacaacttttcttaata 4524117  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 28011844 - 28011889
Alignment:
Q  157 acacattttttaaacaaatttattactccaacaaattttcttaata 202  Q
    |||||||||| ||||||||||||||| ||||||| ||||| |||||    
T  28011844 acacatttttcaaacaaatttattacaccaacaacttttcataata 28011889  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 202
Target Start/End: Complemental strand, 21813945 - 21813913
Alignment:
Q  170 acaaatttattactccaacaaattttcttaata 202  Q
    ||||||||||||||||||||| |||||||||||    
T  21813945 acaaatttattactccaacaacttttcttaata 21813913  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 197
Target Start/End: Original strand, 11065316 - 11065393
Alignment:
Q  120 aatgcatttatacataaagggtagtatagtagtagttacacattttttaaacaaatttattactccaacaaattttct 197  Q
    |||||||||||||| |||||| | | |||||  | | |||||||||| | ||||||||||||| ||||||| ||||||    
T  11065316 aatgcatttatacaaaaagggcaatctagtaaaactaacacatttttcagacaaatttattaccccaacaatttttct 11065393  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 39436090 - 39436131
Alignment:
Q  161 attttttaaacaaatttattactccaacaaattttcttaata 202  Q
    |||||||| ||||||||||||||| ||||| |||||||||||    
T  39436090 attttttagacaaatttattactcaaacaatttttcttaata 39436131  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 49215639 - 49215586
Alignment:
Q  146 tagtagtagttacacattttttaaacaaatttattactccaacaaattttctta 199  Q
    ||||| ||||||||||||| | ||||||||||||||| ||| ||| ||||||||    
T  49215639 tagtaatagttacacatttatcaaacaaatttattacgccagcaatttttctta 49215586  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 202
Target Start/End: Original strand, 42314174 - 42314206
Alignment:
Q  170 acaaatttattactccaacaaattttcttaata 202  Q
    ||||||||||||||||||||| |||||||||||    
T  42314174 acaaatttattactccaacaacttttcttaata 42314206  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 202
Target Start/End: Original strand, 52259345 - 52259377
Alignment:
Q  170 acaaatttattactccaacaaattttcttaata 202  Q
    ||||||||||||||||||||| |||||||||||    
T  52259345 acaaatttattactccaacaacttttcttaata 52259377  T

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Target: scaffold0006 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 202
Target Start/End: Complemental strand, 109436 - 109404
Alignment:
Q  170 acaaatttattactccaacaaattttcttaata 202  Q
    |||||||||||||||||| ||||||||||||||    
T  109436 acaaatttattactccaataaattttcttaata 109404  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 202
Target Start/End: Complemental strand, 13684317 - 13684285
Alignment:
Q  170 acaaatttattactccaacaaattttcttaata 202  Q
    |||||||||||||||||| ||||||||||||||    
T  13684317 acaaatttattactccaataaattttcttaata 13684285  T

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