View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19744_low_63 (Length: 217)
Name: NF19744_low_63
Description: NF19744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19744_low_63 |
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Alignment Details
Target: chr7 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 2602041 - 2601864
Alignment:
| Q |
1 |
aaagggtgttcttcacttttgagatgctcaataaaattcagagatgttaggaaggtatatgcaggtaaaacaaattacatcttaatagttatacttggtt |
100 |
Q |
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| T |
2602041 |
aaagggtgttcttcacttttgagatgctcaataaaattcagagatgttaggaaggtatatgcaggtaaaacaaattacatcataatagttatacttggct |
2601942 |
T |
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| Q |
101 |
tgtacttgtaannnnnnnnacatacaacaacggtgttgtaagggaagaacttaag--tatatatcatagaatgaattt |
176 |
Q |
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| T |
2601941 |
tgtacttgtaatttattttacatacaacaacggtgttgtaagggaagaacttaagtatatatatcattgaatgaattt |
2601864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 12 - 175
Target Start/End: Complemental strand, 2615572 - 2615408
Alignment:
| Q |
12 |
ttcacttttgagatgctcaataaaattcagagatgttaggaaggtatatgcaggtaaaacaaattacatcttaatagttatacttggtttgtacttgtaa |
111 |
Q |
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| T |
2615572 |
ttcacttttgagatgctcaacaaaattcagagatgtttggaaggtatatgcaggtaaaacaaattacatcataatagttatacttggtttgtacttgtaa |
2615473 |
T |
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| Q |
112 |
-nnnnnnnnacatacaacaacggtgttgtaagggaagaacttaagtatatatcatagaatgaatt |
175 |
Q |
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| T |
2615472 |
tttttttttacatacaacaacggtgttgtaagggaagaatttaagtatatatcattgaatgaatt |
2615408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 22193885 - 22193995
Alignment:
| Q |
1 |
aaagggtgttcttcacttttgagatgctcaataaaattcagagatgttaggaaggtatatgcaggtaaaacaaattacatcttaatagttatacttggtt |
100 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||| |
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| T |
22193885 |
aaagggtgttcttcacttttgagatgctcaacaaaattcagagatgttaggaaggtatatgcaggtaaaacgaattacatctaaataattatacttggtt |
22193984 |
T |
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| Q |
101 |
tgtacttgtaa |
111 |
Q |
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||||||||||| |
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| T |
22193985 |
tgtacttgtaa |
22193995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 175
Target Start/End: Original strand, 22194003 - 22194046
Alignment:
| Q |
132 |
ggtgttgtaagggaagaacttaagtatatatcatagaatgaatt |
175 |
Q |
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| T |
22194003 |
ggtgttgtaagggaagaatttaagtatatatcattgaatgaatt |
22194046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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