View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19744_low_66 (Length: 202)
Name: NF19744_low_66
Description: NF19744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19744_low_66 |
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| [»] scaffold1744 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 13 - 185
Target Start/End: Complemental strand, 46467272 - 46467100
Alignment:
| Q |
13 |
aaaataaaagtgatcaagtgagaaaatagcaatgagagtttgggagggagaaagagattttgacttaaagttgcaagtcaaggtgcttaaacacatccat |
112 |
Q |
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| T |
46467272 |
aaaataaaagtgatcaagtgagaaaatagcaatgagagtttgggagggagaaagagattttgacttaaagttgcaagtcaaggtgcttaaacacatccat |
46467173 |
T |
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| Q |
113 |
gattaggagtcaaaagtgccctaagcacgtccataaccatatcaaccataatctccctattatacctcttaag |
185 |
Q |
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| T |
46467172 |
gattaggagtcaaaagtgccctaagcacatccataaccatatcaaccataatctccctattatacctcttaag |
46467100 |
T |
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Target: chr4 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 110 - 185
Target Start/End: Complemental strand, 1472089 - 1472014
Alignment:
| Q |
110 |
catgattaggagtcaaaagtgccctaagcacgtccataaccatatcaaccataatctccctattatacctcttaag |
185 |
Q |
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| T |
1472089 |
catgattaggagtcgataacgccctaagcacatccataaccatatcaaccataatctccctattatccctcttaag |
1472014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 55202673 - 55202717
Alignment:
| Q |
130 |
gccctaagcacgtccataaccatatcaaccataatctccctatta |
174 |
Q |
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| T |
55202673 |
gccctaagcacatccataaccatatcaaccataatttccctatta |
55202717 |
T |
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Target: chr8 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 187184 - 187268
Alignment:
| Q |
13 |
aaaataaaagtgatcaagtgagaaaatagcaatgagagtttgggagggagaaagagattttgacttaaagttgcaagtcaaggtg |
97 |
Q |
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| T |
187184 |
aaaatagaagtgatttaatgagaaaattgcaatgcacgtttgagagggagaaagagtttttgactgtaagttgcaagtcaaggtg |
187268 |
T |
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Target: scaffold1744 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1744
Description:
Target: scaffold1744; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 529 - 612
Alignment:
| Q |
13 |
aaaataaaagtgatcaagtgagaaaatagcaatgagagtttgggagggagaaagagattttgacttaaagttgcaagtcaaggtg |
97 |
Q |
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|||||| ||||||| | ||||||||| |||||| ||||| ||||||||| ||| |||||||| |||||||||||||||||| |
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| T |
529 |
aaaatagaagtgatttaatgagaaaattgcaatgcacgtttgagagggagaaggag-ttttgactgtaagttgcaagtcaaggtg |
612 |
T |
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