View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19744_low_7 (Length: 500)
Name: NF19744_low_7
Description: NF19744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19744_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 40570000 - 40570296
Alignment:
| Q |
1 |
aatgcaattaaaagtaaatttcacggagatggacaacataatttgtaaatactagatgtcattactgcagtttgaatccacaagctcacttacattacat |
100 |
Q |
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| T |
40570000 |
aatgcaattaaaagtaaatttcacggagatggacaacataatttgtaaatactagatgtcattactgcagtttgaattcacaagctcacttacattacat |
40570099 |
T |
|
| Q |
101 |
caataaataatatgtatgcaattatcatacacatctatgtcagcaaaaacagagactttgtcaataacccagatgttactatatagtatatatcattatt |
200 |
Q |
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| T |
40570100 |
caataaataatatgtatgcaattatcatacacatctatgtcagcaaaaacagagactttgtcaataacccagatgttactatatagtatatatcattatt |
40570199 |
T |
|
| Q |
201 |
aaattatcatgatcaaaatggttagaccattgataatgtaatatttataccaattcacatttaggatcataacataaacattctttttgacagaaac |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40570200 |
aaattatcatgatcaaaatggttagaccattgataatgtaatatttataccaattcacatttaggatcataacataaacattctttttgacagaaac |
40570296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 362 - 490
Target Start/End: Original strand, 40570361 - 40570489
Alignment:
| Q |
362 |
agttttaaataatattagtgattgcaatgtctctaagcaagtaagcatgctgtttaagttttataggtcgaaagacaatgttatctatcaccagctagcc |
461 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40570361 |
agttttaaataatattagtgattgcaatgtctctaagcaagtaagcatgctgtttaagttttataggtcgaaagacaatgttatctatcaccagctagcc |
40570460 |
T |
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| Q |
462 |
tctgataacgtttaattaacctccctttg |
490 |
Q |
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| T |
40570461 |
tctgataacgtttaattaacctccttttg |
40570489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 447
Target Start/End: Original strand, 8490102 - 8490178
Alignment:
| Q |
362 |
agttttaaataatattagtgattgcaatgtctctaagcaagtaagcatgctgtttaagttttataggtcgaaagacaatgttatct |
447 |
Q |
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| T |
8490102 |
agttttaaataatat-agtgattgcaatgtctctaacca--------tgctgtttgagttttataggtcgaaagacagagttatct |
8490178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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