View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19744_low_8 (Length: 499)

Name: NF19744_low_8
Description: NF19744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19744_low_8
NF19744_low_8
[»] chr5 (18 HSPs)
chr5 (19-293)||(37399115-37399386)
chr5 (294-499)||(37699013-37699222)
chr5 (19-293)||(37380638-37380906)
chr5 (294-472)||(37437584-37437762)
chr5 (294-499)||(37704492-37704697)
chr5 (103-293)||(37825490-37825686)
chr5 (186-293)||(37534677-37534781)
chr5 (186-293)||(37713201-37713305)
chr5 (186-293)||(37595907-37596014)
chr5 (186-293)||(37641458-37641562)
chr5 (25-293)||(37441521-37441794)
chr5 (294-416)||(37698732-37698859)
chr5 (180-290)||(37411779-37411886)
chr5 (205-293)||(37437278-37437366)
chr5 (205-293)||(37698370-37698458)
chr5 (186-291)||(37704247-37704349)
chr5 (19-293)||(37391237-37391524)
chr5 (99-190)||(37534795-37534889)
[»] chr4 (2 HSPs)
chr4 (294-409)||(16840988-16841109)
chr4 (190-290)||(24216220-24216317)
[»] chr3 (1 HSPs)
chr3 (214-293)||(14554636-14554715)


Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 293
Target Start/End: Original strand, 37399115 - 37399386
Alignment:
Q  19 aagcacccctaactacaaaacaagagcatgccaagacttattcagttatgtttcacatataaataactagagtgtaatggattggtacatacaaaatcat 118  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37399115 aagcacccctaactagaaaacaagagcatgccaagacttattcagttatgtttcacatataaataactagagtgtaatggattggtacatacaaaatcat 37399214  T
Q  119 cataaagtaaaaaagaaataatattggtaagagagtattagtctaagtcgctctaaatggggtccttttttacctttcacttgttcttcttgttgttgtt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||||   ||||||||||||||    
T  37399215 cataaagtaaaaaagaaataatattggtaagagagtattagtctaagtcgctcgaaatggggtccttttttaaatttcacttg---ttcttgttgttgtt 37399311  T
Q  219 gattactcattttacttcccacactttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaa 293  Q
    ||||||||||||||||||  ||||||||||||| |||||| | ||||||| ||||||||||||||||||||||||    
T  37399312 gattactcattttacttcatacactttctcactatgcaaccatcatgacacctctgccttgttacaattcaaaaa 37399386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 294 - 499
Target Start/End: Complemental strand, 37699222 - 37699013
Alignment:
Q  294 gaatttgttatcttattatcacaacttgcaataagattccaactt----gctaattacgttcgaaaagtcttggtcttccaatatgttatttagtttaat 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  37699222 gaatttgttatcttattatcacaacttgcaataagattccaactttagtgctaattacgttcgaaaagtcttggttttccaagatgttatttagtttaat 37699123  T
Q  390 gaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataaggga 489  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||    
T  37699122 gaacaccaaacttttctatgattgttactgaattaatattgttgccaaatgtcatatcagtatacggttatgaaaagcacccccaacacaaaataaggga 37699023  T
Q  490 atacgtagac 499  Q
    |||| |||||    
T  37699022 atacctagac 37699013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 19 - 293
Target Start/End: Original strand, 37380638 - 37380906
Alignment:
Q  19 aagcacccctaactacaaaacaagagcatgccaagacttattcagttatgtttcacatataaataactagagtgtaatggattggtacatacaaaatcat 118  Q
    |||||||||| |||| ||||||| |||||||||||||||| || ||||||||||  ||||||||| |||||||||||||||||||||||||||| |||||    
T  37380638 aagcaccccttactataaaacaatagcatgccaagacttactcggttatgtttcctatataaatacctagagtgtaatggattggtacatacaacatcat 37380737  T
Q  119 cataaagtaaaaaagaaataatattggtaagagagtattagtctaagtcgctctaaatggggtccttttttacctttcacttgttcttcttgttgttgtt 218  Q
    ||   | ||||||||||| ||||||| ||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||   ||||||||||||||    
T  37380738 ca---actaaaaaagaaagaatattgataatagagtataagtctaagtcgttctaaatggggtccttttttacctttcacttg---ttcttgttgttgtt 37380831  T
Q  219 gattactcattttacttcccacactttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaa 293  Q
    | ||||||||||||||||||||||||||||| |||||||| ||||||| |  |||||||||||||| ||||||||    
T  37380832 gcttactcattttacttcccacactttctcattgtgcaaccaacatgatacatctgccttgttacatttcaaaaa 37380906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 294 - 472
Target Start/End: Complemental strand, 37437762 - 37437584
Alignment:
Q  294 gaatttgttatcttattatcacaacttgcaataagattccaacttgctaattacgttcgaaaagtcttggtcttccaatatgttatttagtttaatgaac 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37437762 gaatttgttatcttattatcacaacttgcaataagattccaacttgctaattacgttcgaaaagtcttggtcttccaatatgttatttagtttaatgaac 37437663  T
Q  394 accaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccc 472  Q
    |||||||||||||||||| |||| |||||||||||||||||||| |||||||||| |||| | ||||||||||||||||    
T  37437662 accaaacttttctatgattgttattgaattaatattgttgccaattgtcatatcactatacggttatgaaaagcacccc 37437584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 294 - 499
Target Start/End: Complemental strand, 37704697 - 37704492
Alignment:
Q  294 gaatttgttatcttattatcacaacttgcaataagattccaactt----gctaattacgttcgaaaagtcttggtcttccaatatgttatttagtttaat 389  Q
    ||||||||||||||||   ||||||||| ||||||||||||||||    ||||||||||||| |||||||| ||||||| || || ||||||||||||||    
T  37704697 gaatttgttatcttat---cacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtct-ggtcttcgaagatattatttagtttaat 37704602  T
Q  390 gaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataaggga 489  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704601 gaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataaggga 37704502  T
Q  490 atacgtagac 499  Q
    ||||||||||    
T  37704501 atacgtagac 37704492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 103 - 293
Target Start/End: Complemental strand, 37825686 - 37825490
Alignment:
Q  103 gtacatacaaaatcat--cataaagtaaaaaagaaataatattggtaagagagtatta-gtctaagtcgctctaaatggggtccttttttacctttcact 199  Q
    |||||| |||||||||  ||||||| ||||| |||| |||| ||  |||||||||||| || |||||  ||||||||||| |||||||||||||||||||    
T  37825686 gtacatccaaaatcatatcataaaggaaaaaggaaagaatactgagaagagagtattaagtgtaagtttctctaaatgggatccttttttacctttcact 37825587  T
Q  200 tgttctt---cttgttgttgttgattactcattttacttcccacactttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaa 293  Q
    | |||||   ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37825586 ttttcttgttcttgttgttgttgattactcattttacttcctacactttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaa 37825490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 186 - 293
Target Start/End: Complemental strand, 37534781 - 37534677
Alignment:
Q  186 ttttacctttcacttgttcttcttgttgttgttgattactcattttacttcccacactttctcactgtgcaacaaacatgacaactctgccttgttacaa 285  Q
    ||||||||||||||| |||||   |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  37534781 ttttacctttcactttttctt---gttgttgttgattactcattttacttcctacactttctcactgtgcaacaaacatgacaactctgccttgttacaa 37534685  T
Q  286 ttcaaaaa 293  Q
    ||||||||    
T  37534684 ttcaaaaa 37534677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 186 - 293
Target Start/End: Complemental strand, 37713305 - 37713201
Alignment:
Q  186 ttttacctttcacttgttcttcttgttgttgttgattactcattttacttcccacactttctcactgtgcaacaaacatgacaactctgccttgttacaa 285  Q
    |||||||||||||||   ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37713305 ttttacctttcactt---cttctcgttgttgttgcttactcattttacttcccacactttctcactgtgcaacaaacatgacaactctgccttgttacaa 37713209  T
Q  286 ttcaaaaa 293  Q
    ||||||||    
T  37713208 ttcaaaaa 37713201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 186 - 293
Target Start/End: Complemental strand, 37596014 - 37595907
Alignment:
Q  186 ttttacctttcacttgttcttcttgttgttgttgattactcattttacttcccacactttctcactgtgcaacaaacatgacaactctgccttgttacaa 285  Q
    ||||||||||||||| ||||| ||||||||| || ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  37596014 ttttacctttcactttttcttgttgttgttgctgcttactcattttacttcctacactttctcattgtgcaacaaacatgacaactctgccttgttacaa 37595915  T
Q  286 ttcaaaaa 293  Q
    ||||||||    
T  37595914 ttcaaaaa 37595907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 186 - 293
Target Start/End: Complemental strand, 37641562 - 37641458
Alignment:
Q  186 ttttacctttcacttgttcttcttgttgttgttgattactcattttacttcccacactttctcactgtgcaacaaacatgacaactctgccttgttacaa 285  Q
    |||||||||||||||   ||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||    
T  37641562 ttttacctttcactt---cttgttgttgttgttgattactcattttacttcctacactttctcactgtgcaaccaacatgacacctctgccttgttacaa 37641466  T
Q  286 ttcaaaaa 293  Q
    ||||||||    
T  37641465 ttcaaaaa 37641458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 25 - 293
Target Start/End: Complemental strand, 37441794 - 37441521
Alignment:
Q  25 ccctaactacaaaacaagagcatgccaagacttattcagttatgtttcacatataaataactagagtgtaatggattggtacatacaaaatcatcataaa 124  Q
    |||| |||||||||||||||||||||||||||| ||| | | |||||| |||||||||||||| ||| ||||||||||||||||||| |||| ||   ||    
T  37441794 cccttactacaaaacaagagcatgccaagacttgttcggctgtgtttcccatataaataactacagtttaatggattggtacatacataatcctc---aa 37441698  T
Q  125 gtaaaaaagaaataatattggtaagagagtattagtctaagtcgctctaaatggggtcctttttta------------------cctttcacttgttctt 206  Q
    |||||||||||| |||||||  ||||       ||| |||||  |||||||| |||||||||||||                  |||||||| |||||||    
T  37441697 gtaaaaaagaaagaatattgagaaga------aagtgtaagtatctctaaat-gggtccttttttattttattgccttattttacctttcacatgttctt 37441605  T
Q  207 cttgttgttgttgattactcattttacttcccacactttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaa 293  Q
    |   |||||| || ||||||||||||||||| | |||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  37441604 c---ttgttgctgcttactcattttacttcctatactttctcactgtgaaacaaacatgacacctctgccttgttacaattcaaaaa 37441521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 294 - 416
Target Start/End: Complemental strand, 37698859 - 37698732
Alignment:
Q  294 gaatttgttatcttattatcacaacttgcaataagattccaactt----gctaatta----cgttcgaaaagtcttggtcttccaatatgttatttagtt 385  Q
    ||||||||||||||||   ||||||||||||||||||||||||||    ||||||||    ||||  ||||||||||||||||||| |||||||||||||    
T  37698859 gaatttgttatcttat---cacaacttgcaataagattccaactttagtgctaattaattacgttaaaaaagtcttggtcttccaagatgttatttagtt 37698763  T
Q  386 taatgaacaccaaacttttctatgatggtta 416  Q
    ||| ||||||||||||||| |||||| ||||    
T  37698762 taacgaacaccaaacttttgtatgattgtta 37698732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 180 - 290
Target Start/End: Original strand, 37411779 - 37411886
Alignment:
Q  180 gtccttttttacctttcacttgttcttcttgttgttgttgattactcattttacttcccacactttctcactgtgcaacaaacatgacaactctgccttg 279  Q
    ||||| ||||||||||||||||||||| ||| || ||||   |||||||||||||||| |||| |||||| | |||||| | ||||||| || |||||||    
T  37411779 gtcctattttacctttcacttgttcttgttgctgctgtt---tactcattttacttcctacaccttctcattatgcaactatcatgacagctttgccttg 37411875  T
Q  280 ttacaattcaa 290  Q
    |||||||||||    
T  37411876 ttacaattcaa 37411886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 205 - 293
Target Start/End: Complemental strand, 37437366 - 37437278
Alignment:
Q  205 ttcttgttgttgttgattactcattttacttcccacactttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaa 293  Q
    |||| |||||||||| ||||||| |||||| |||||||||||||| | |||||| | ||||||| ||||||||| ||||||||||||||    
T  37437366 ttctcgttgttgttgcttactcactttactacccacactttctcattatgcaaccatcatgacacctctgccttattacaattcaaaaa 37437278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 205 - 293
Target Start/End: Complemental strand, 37698458 - 37698370
Alignment:
Q  205 ttcttgttgttgttgattactcattttacttcccacactttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaa 293  Q
    ||||||||||||||| ||||||||||||||||| ||||  ||||| | |||||| | |||||||  |||||||||||||||||||||||    
T  37698458 ttcttgttgttgttgcttactcattttacttcctacacactctcattatgcaaccatcatgacagttctgccttgttacaattcaaaaa 37698370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 186 - 291
Target Start/End: Complemental strand, 37704349 - 37704247
Alignment:
Q  186 ttttacctttcacttgttcttcttgttgttgttgattactcattttacttcccacactttctcactgtgcaacaaacatgacaactctgccttgttacaa 285  Q
    |||||| ||||||||||||||   ||| ||| || ||||||||||||||||| ||||||||||| |||||| | ||||||| | ||| ||||||||||||    
T  37704349 ttttacttttcacttgttctt---gttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatgatagctccgccttgttacaa 37704253  T
Q  286 ttcaaa 291  Q
    ||||||    
T  37704252 ttcaaa 37704247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 293
Target Start/End: Original strand, 37391237 - 37391524
Alignment:
Q  19 aagcacccctaactacaaaacaagagcatgccaagacttattcagttatgtttcacatataaataactagagtgtaatggattggtacatacaaaatcat 118  Q
    |||||||||| |||||| ||||||||||||||||||||| ||| ||||||||||  ||||| |||  | |||  ||||  |||||||||| |||||||||    
T  37391237 aagcaccccttactacataacaagagcatgccaagacttgttcggttatgtttcctatatatatagattgaggctaatcaattggtacattcaaaatcat 37391336  T
Q  119 cataaagtaaaaaagaaataatattggtaagagagtatta-gtctaagtcgctctaaatggggtcctt------------------ttttacctttcact 199  Q
    ||   | |||||| |||| | ||| |  |||||| | ||| || ||||| ||||||||||||||||||                  ||||||||||||||    
T  37391337 ca---actaaaaacgaaagactatcgagaagagatttttaagtgtaagttgctctaaatggggtccttgtttattttattgccttattttacctttcact 37391433  T
Q  200 tgttcttcttgttgttgttgattactcattttacttcccacactttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaa 293  Q
    ||||| |   |||||||||| ||||||||||||||||| | ||| ||||| ||||||||   ||||| | |||||||||| |||||||||||||    
T  37391434 tgttcat---gttgttgttgcttactcattttacttcctatactctctcattgtgcaaccttcatgatagctctgccttgctacaattcaaaaa 37391524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 99 - 190
Target Start/End: Complemental strand, 37534889 - 37534795
Alignment:
Q  99 attggtacatacaaaatcat--cataaagtaaaaaagaaataatattggtaagagagtatt-agtctaagtcgctctaaatggggtcctttttta 190  Q
    |||||||||| |||||||||  ||||||| ||||| ||||||||| ||  ||||||||||| ||| |||||  ||||||||||| ||||||||||    
T  37534889 attggtacatccaaaatcatatcataaaggaaaaaggaaataatactgagaagagagtattaagtgtaagtttctctaaatgggatcctttttta 37534795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 294 - 409
Target Start/End: Original strand, 16840988 - 16841109
Alignment:
Q  294 gaatttgttatcttatta---tcacaacttgcaataagattccaactt---gctaattacgttcgaaaagtcttggtcttccaatatgttatttagttta 387  Q
    ||||||||||||||||||   |||||||||||||||||||||||||||   ||||||||||||| ||||||||||||||||||| || ||||||||||||    
T  16840988 gaatttgttatcttattaatatcacaacttgcaataagattccaacttagtgctaattacgttcaaaaagtcttggtcttccaagattttatttagttta 16841087  T
Q  388 atgaacaccaaacttttctatg 409  Q
     | |||||||||||||| ||||    
T  16841088 ttaaacaccaaacttttgtatg 16841109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 190 - 290
Target Start/End: Original strand, 24216220 - 24216317
Alignment:
Q  190 acctttcacttgttcttcttgttgttgttgattactcattttacttcccacactttctcactgtgcaacaaacatgacaactctgccttgttacaattca 289  Q
    ||||||||||||||| |   |||||||||| ||||||||||||||||  |||||| |||| | |||||| | |||||||  ||||| |||||||||||||    
T  24216220 acctttcacttgttcat---gttgttgttgcttactcattttacttcttacacttactcattctgcaaccatcatgacagttctgcattgttacaattca 24216316  T

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Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 214 - 293
Target Start/End: Complemental strand, 14554715 - 14554636
Alignment:
Q  214 ttgttgattactcattttacttcccacactttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaa 293  Q
    |||||| ||||||||||||||||| | ||||||||| |||||||| ||||||||| ||||||||||||||||||||||||    
T  14554715 ttgttgcttactcattttacttcctatactttctcattgtgcaaccaacatgacacctctgccttgttacaattcaaaaa 14554636  T

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