View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19745_high_3 (Length: 478)
Name: NF19745_high_3
Description: NF19745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19745_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 100 - 473
Target Start/End: Complemental strand, 32405669 - 32405277
Alignment:
| Q |
100 |
aaggttgaaaatgatgatttaatctaaattgaatccaacatactatacannnnnnnnnn-caacaaaaccaaactcaatgcatttcattcaaaataaatg |
198 |
Q |
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| T |
32405669 |
aaggttgaaaatgatgatttaatctaaattggatccaacatactatacatttttttttttcaacaaaaccaaactcaatgcatttcattcaaaataaatg |
32405570 |
T |
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| Q |
199 |
tagaaatacatgttgggatgaaattaaaaatatggtgcctaacatgcaacattgacgc------------------gacatggtatgtttgtccatgaat |
280 |
Q |
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| T |
32405569 |
tagaaatacatgttgggatgaaattaaaaatatggtgcctaacatgcaacattgacgccctggctaagttatgagcgacatggtatgtttgtccatgaat |
32405470 |
T |
|
| Q |
281 |
aaaacttattataaagtttggagagaaattcnnnnnnngatctaaaatcatttaaaatgactctcaattcaatttggttcctagaattatcaaagatacc |
380 |
Q |
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| T |
32405469 |
aaaacttattataaagtttggagagaaattcaaaaaaagatctaaaatcatttaaaatgactctcaattcaatttggttcctagaattatcaaagatacc |
32405370 |
T |
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| Q |
381 |
atccattacttctttgcaatcgagttcaatggttatcttcgataatcccaactcatcaagccaggtgagtgctttctttacacctatgcttct |
473 |
Q |
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| T |
32405369 |
atccactacttctttgcaatcgagttcaatggttatcttcgataatcccaactcatcaagccaggtgagtgctttctttacacctaagcttct |
32405277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 32405653 - 32405702
Alignment:
| Q |
1 |
tcatcattttcaaccttgacatgcccacataattgattggatgtaacata |
50 |
Q |
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| T |
32405653 |
tcatcattttcaaccttgacatgcccacataattgattggatgtaacata |
32405702 |
T |
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