View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19745_low_1 (Length: 754)

Name: NF19745_low_1
Description: NF19745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19745_low_1
NF19745_low_1
[»] chr3 (18 HSPs)
chr3 (1-507)||(1639154-1639659)
chr3 (29-194)||(14264882-14265050)
chr3 (28-157)||(13626320-13626450)
chr3 (28-187)||(19234530-19234692)
chr3 (55-194)||(7953539-7953682)
chr3 (31-189)||(17370275-17370435)
chr3 (31-131)||(6465052-6465153)
chr3 (28-199)||(48088266-48088441)
chr3 (28-131)||(25577301-25577405)
chr3 (28-158)||(37280829-37280959)
chr3 (31-125)||(39417672-39417767)
chr3 (43-187)||(8634123-8634270)
chr3 (31-158)||(43687605-43687732)
chr3 (53-185)||(53561233-53561369)
chr3 (28-130)||(36722071-36722173)
chr3 (36-134)||(29635503-29635602)
chr3 (272-361)||(7634451-7634541)
chr3 (31-134)||(3163217-3163321)
[»] chr4 (22 HSPs)
chr4 (29-239)||(31930994-31931208)
chr4 (29-214)||(42420474-42420662)
chr4 (28-193)||(18411935-18412103)
chr4 (29-204)||(13850199-13850377)
chr4 (43-158)||(17210648-17210764)
chr4 (28-194)||(14331416-14331584)
chr4 (28-194)||(24606077-24606246)
chr4 (29-190)||(13865740-13865904)
chr4 (43-194)||(31323658-31323811)
chr4 (28-131)||(31825324-31825428)
chr4 (28-131)||(31825570-31825674)
chr4 (28-158)||(27759013-27759144)
chr4 (28-121)||(20779649-20779743)
chr4 (28-124)||(44099879-44099976)
chr4 (28-131)||(32938576-32938680)
chr4 (43-158)||(21710919-21711035)
chr4 (29-124)||(23125248-23125345)
chr4 (29-105)||(20759714-20759792)
chr4 (29-105)||(20766105-20766183)
chr4 (56-153)||(39039485-39039583)
chr4 (42-131)||(49063371-49063461)
chr4 (31-134)||(12587153-12587257)
[»] chr1 (22 HSPs)
chr1 (28-239)||(21760951-21761164)
chr1 (39-239)||(15470976-15471180)
chr1 (31-194)||(25804143-25804309)
chr1 (28-216)||(48707492-48707682)
chr1 (28-199)||(48569125-48569300)
chr1 (28-131)||(21485347-21485451)
chr1 (29-268)||(26088731-26088969)
chr1 (28-131)||(49599570-49599674)
chr1 (28-158)||(3658022-3658153)
chr1 (28-134)||(34335728-34335835)
chr1 (28-131)||(41875599-41875703)
chr1 (28-177)||(27799099-27799250)
chr1 (28-130)||(5764594-5764697)
chr1 (28-193)||(27259390-27259557)
chr1 (28-187)||(18169358-18169519)
chr1 (42-131)||(39224935-39225025)
chr1 (253-362)||(21761151-21761260)
chr1 (28-131)||(18841839-18841944)
chr1 (252-362)||(15470880-15470990)
chr1 (30-185)||(12025646-12025803)
chr1 (272-361)||(26088618-26088707)
chr1 (151-199)||(49599680-49599728)
[»] chr5 (16 HSPs)
chr5 (28-193)||(28717537-28717707)
chr5 (28-239)||(10975234-10975447)
chr5 (28-194)||(2598678-2598847)
chr5 (31-158)||(25361172-25361300)
chr5 (28-191)||(15798667-15798834)
chr5 (29-194)||(4113804-4113973)
chr5 (29-124)||(12804962-12805058)
chr5 (28-158)||(7081655-7081785)
chr5 (35-131)||(23229324-23229422)
chr5 (29-124)||(36317622-36317721)
chr5 (28-113)||(16418676-16418761)
chr5 (50-158)||(33370006-33370115)
chr5 (29-131)||(12742140-12742239)
chr5 (58-124)||(22858328-22858396)
chr5 (251-297)||(19550923-19550969)
chr5 (252-358)||(23229501-23229606)
[»] chr7 (15 HSPs)
chr7 (28-186)||(27318412-27318573)
chr7 (35-297)||(31266759-31267026)
chr7 (28-194)||(39477756-39477924)
chr7 (28-190)||(8726928-8727095)
chr7 (31-125)||(21615474-21615569)
chr7 (51-199)||(18236893-18237043)
chr7 (28-185)||(7414582-7414743)
chr7 (29-158)||(13798685-13798815)
chr7 (29-124)||(28065817-28065914)
chr7 (29-124)||(11823879-11823976)
chr7 (28-131)||(40592126-40592230)
chr7 (69-186)||(16887077-16887196)
chr7 (36-121)||(12082462-12082549)
chr7 (31-121)||(18146354-18146446)
chr7 (28-88)||(47268346-47268407)
[»] chr2 (17 HSPs)
chr2 (28-216)||(26618053-26618244)
chr2 (28-189)||(21557333-21557497)
chr2 (28-184)||(40500770-40500929)
chr2 (28-131)||(20147513-20147617)
chr2 (28-131)||(29110561-29110665)
chr2 (28-158)||(16706191-16706322)
chr2 (43-194)||(32734113-32734267)
chr2 (28-134)||(5307063-5307170)
chr2 (43-131)||(29905975-29906064)
chr2 (29-112)||(18878056-18878141)
chr2 (28-158)||(42241808-42241938)
chr2 (306-362)||(5726842-5726898)
chr2 (28-101)||(37058464-37058538)
chr2 (43-123)||(27651379-27651461)
chr2 (272-362)||(11804919-11805009)
chr2 (28-67)||(20530344-20530383)
chr2 (307-362)||(34233636-34233691)
[»] chr6 (14 HSPs)
chr6 (29-233)||(24559282-24559496)
chr6 (28-199)||(800489-800664)
chr6 (31-241)||(20243598-20243804)
chr6 (31-241)||(22137582-22137788)
chr6 (31-215)||(5570582-5570767)
chr6 (29-125)||(3098084-3098182)
chr6 (28-189)||(34208260-34208425)
chr6 (28-177)||(19242284-19242436)
chr6 (33-128)||(18744543-18744640)
chr6 (28-110)||(12026634-12026717)
chr6 (28-110)||(12033554-12033637)
chr6 (101-190)||(4286548-4286639)
chr6 (64-130)||(446093-446159)
chr6 (90-124)||(28050812-28050846)
[»] chr8 (6 HSPs)
chr8 (43-194)||(40414066-40414220)
chr8 (28-131)||(16575090-16575194)
chr8 (31-190)||(14998692-14998855)
chr8 (29-158)||(22843916-22844046)
chr8 (42-124)||(43692545-43692628)
chr8 (28-67)||(32109527-32109566)
[»] scaffold0489 (1 HSPs)
scaffold0489 (28-192)||(7491-7657)
[»] scaffold0004 (1 HSPs)
scaffold0004 (28-124)||(39325-39422)
[»] scaffold0294 (1 HSPs)
scaffold0294 (28-110)||(537-620)
[»] scaffold0121 (1 HSPs)
scaffold0121 (31-187)||(4680-4833)
[»] scaffold0027 (1 HSPs)
scaffold0027 (251-363)||(36152-36264)
[»] scaffold0591 (1 HSPs)
scaffold0591 (28-110)||(2217-2300)


Alignment Details
Target: chr3 (Bit Score: 399; Significance: 0; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 507
Target Start/End: Original strand, 1639154 - 1639659
Alignment:
Q  1 ttaaacaaaccataaaactnnnnnnnnttctaatttaagaggaaaaatttaacatataaacataaaagttaatgatatttgattatgataacttacttgt 100  Q
    |||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1639154 ttaaacaaaccataaaactaaaaaaaattctaatttaagaggaaaaatttaacatataaacataaaagttaatgatatttgattatgataacttacttgt 1639253  T
Q  101 tattggagtgttgttggatttgaacctgaagaaaataaggatttggttaatttgagagtttttggagatttgagatgagaaatgaggaaatgagctgctg 200  Q
    ||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  1639254 tattggagtgttgttggatttgaatttgaagaaaataaggatttg-ttaatttgagagtttttggagatttgagatgagaaatgagaaaatgagctgctg 1639352  T
Q  201 tctgacctttaaaagggtacacaatgtgacttaactcacattggcctttggcgtgatttaactcacgctgatttaacacatgtgtgacttaactcacact 300  Q
    ||||||||||||||||| |||||||||| |||||||||| ||||||||  |||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  1639353 tctgacctttaaaagggcacacaatgtggcttaactcacgttggccttaagcgtgacttaactcacgctgatttaacacatgcgtgacttaactcacact 1639452  T
Q  301 gggaacattttcggaagtttgattggaagtgagtaaaacttgttggaagaagagcatttttcggcacaatatatggatgacacatcaatgacatctaaga 400  Q
    ||||||||||| ||||||||  |||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1639453 gggaacatttttggaagtttagttggatctgagtaaaacttgttggaagaagagcattttttggcacaatatatggatgacacatcaatgacatctaaga 1639552  T
Q  401 ggcttcatgttacctacaattaatgaataattttagcaaccatttggacattaagtgactgtgttcaagggccattttctaagacatattttaccaactt 500  Q
    || ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1639553 gggttcatgttacctacaattaatcaatatttttagcaaccatttggacattaagtgactgtgttcaagggccattttctaagacatattttaccaactt 1639652  T
Q  501 tcattcc 507  Q
    |||||||    
T  1639653 tcattcc 1639659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 29 - 194
Target Start/End: Complemental strand, 14265050 - 14264882
Alignment:
Q  29 tctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacct 127  Q
    ||||||||||||| |||||| ||||||||||||||||||| |||| | | ||||||||||| ||||||||||||| |||||||||||| ||||||||| |    
T  14265050 tctaatttaagagaaaaaatctaacatataaacataaaagcttaacggtgtttgattatgaaaacttacttgttaatggagtgttgttagatttgaactt 14264951  T
Q  128 gaagaaaataaggatttggttaattt--gagagtttttggagatttgagatgagaaatgaggaaatgag 194  Q
    |||| || |   ||||||| | ||||  ||||| |||||||||||| ||||||||||||||||||||||    
T  14264950 gaaggaatttttgatttgggtgatttgagagagattttggagattttagatgagaaatgaggaaatgag 14264882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 28 - 157
Target Start/End: Complemental strand, 13626450 - 13626320
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 126  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||| | ||||||||| | |||||||||||||||| ||||||||| |||||||||     
T  13626450 ttctaatttaagaggaaaaatctaacatataaacataaaatgttaatggtgtttgattataaaaacttacttgttattgaagtgttgtttgatttgaact 13626351  T
Q  127 tgaagaaaataaggatttggttaatttgaga 157  Q
    | |||||| || |||||||||| ||||||||    
T  13626350 ttaagaaattagggatttggttgatttgaga 13626320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 28 - 187
Target Start/End: Complemental strand, 19234692 - 19234530
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 126  Q
    |||||||||||||| |||||| ||| |||||||||||||| ||||||| | ||||||||||| ||||||||||||| |||||||| ||| |||||||||     
T  19234692 ttctaatttaagagaaaaaatctaagatataaacataaaatgttaatggtgtttgattatgaaaacttacttgttaatggagtgtggtttgatttgaact 19234593  T
Q  127 tgaagaaaataaggatttggttaatttgagag--tttttggagatttgagatgagaaatgagg 187  Q
    ||||  || |  |||||||| |||||||||||   |||| ||||||| |||||||||||||||    
T  19234592 tgaaagaattttggatttgggtaatttgagagaaatttttgagatttaagatgagaaatgagg 19234530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 55 - 194
Target Start/End: Complemental strand, 7953682 - 7953539
Alignment:
Q  55 tataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctgaagaaaataaggatttggttaattt 153  Q
    |||||||||||||| |||||| | ||||||||||| |||||||||||||||||||||||||| ||||||||| ||||  || |  |||||||| | ||||    
T  7953682 tataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaacttgaacgaattttggatttgggtgattt 7953583  T
Q  154 gagag---tttttggagatttgagatgagaaatgaggaaatgag 194  Q
    |||||   ||||| ||||||| ||||||||||||||||||||||    
T  7953582 gagagagattttttgagattttagatgagaaatgaggaaatgag 7953539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 31 - 189
Target Start/End: Complemental strand, 17370435 - 17370275
Alignment:
Q  31 taatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctga 129  Q
    |||||||||||||||||| ||||||||||| |||||| ||||||| | ||||||||||| |||||||||||||||||||||||| | ||||||||| | |    
T  17370435 taatttaagaggaaaaatctaacatataaaaataaaatgttaatggtgtttgattatgaaaacttacttgttattggagtgttgattgatttgaacttaa 17370336  T
Q  130 agaaaataagga-tttggttaattt--gagagtttttggagatttgagatgagaaatgaggaa 189  Q
    ||||| |  ||| ||||| | ||||  |||||||||| |||||||  ||||||||||||||||    
T  17370335 agaaatt--ggagtttggatgatttgagagagtttttagagatttaggatgagaaatgaggaa 17370275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 31 - 131
Target Start/End: Original strand, 6465052 - 6465153
Alignment:
Q  31 taatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctga 129  Q
    ||||||||||| |||| | ||||||||||||||||||| |||||| | ||||||||||| |||||||||||||||||||||||||| ||||||||| |||    
T  6465052 taatttaagagaaaaagtctaacatataaacataaaaggttaatgctgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaacttga 6465151  T
Q  130 ag 131  Q
    ||    
T  6465152 ag 6465153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 28 - 199
Target Start/End: Original strand, 48088266 - 48088441
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaa--gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaac 125  Q
    |||||||| ||||| |||||| ||||||||||||||||||  ||||||| | |||||| |||| ||||||||||||||||||||||||||  ||||||||    
T  48088266 ttctaattcaagagaaaaaatctaacatataaacataaaaaggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttaatttgaac 48088365  T
Q  126 ctgaagaaaataaggatttggttaattt--gagagtttttggagatttgagatgagaaatgaggaaatgagctgct 199  Q
     ||||| || |  | |||||  | ||||  ||||| |||| ||||||| ||||||||||||| |||||||| ||||    
T  48088366 ttgaaggaattttgaatttgagtgatttgagagagatttttgagattttagatgagaaatgatgaaatgaggtgct 48088441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 28 - 131
Target Start/End: Original strand, 25577301 - 25577405
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 126  Q
    |||||||||||||| |||||| ||||||||||||||||||| |||||| | |||||| |||| |||||| ||||||||||||||||||| |||||||||     
T  25577301 ttctaatttaagagaaaaaatctaacatataaacataaaaggttaatggtgtttgatcatgaaaacttatttgttattggagtgttgtttgatttgaact 25577400  T
Q  127 tgaag 131  Q
    |||||    
T  25577401 tgaag 25577405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 28 - 158
Target Start/End: Complemental strand, 37280959 - 37280829
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 126  Q
    |||||||||| ||| |||||| ||||||||||||||||||| |||||| | |||||| |||| |||||||||||||||||||||||||| |||||||||     
T  37280959 ttctaatttatgag-aaaaatataacatataaacataaaaggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaact 37280861  T
Q  127 tgaagaaaataaggatttggttaatttgagag 158  Q
    ||||| || |  |||||||| | |||||||||    
T  37280860 tgaaggaattttggatttgggtgatttgagag 37280829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 31 - 125
Target Start/End: Original strand, 39417672 - 39417767
Alignment:
Q  31 taatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaac 125  Q
    ||||||||||| |||||| ||||||||||||||||||| |||||| | |||||| |||| |||||||||||||||||||||||||| |||||||||    
T  39417672 taatttaagagaaaaaatctaacatataaacataaaaggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaac 39417767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 43 - 187
Target Start/End: Original strand, 8634123 - 8634270
Alignment:
Q  43 aaaaatttaacatataaacataaaagttaa-tgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctgaagaaaataagga 141  Q
    |||||| ||||||||||||||||||| ||| |||| ||||||||||| ||||||||||| |||| ||||||||| ||||||||| |||||||  |  ||     
T  8634123 aaaaatctaacatataaacataaaaggtaaatgatgtttgattatgaaaacttacttgtgattgaagtgttgtttgatttgaacttgaagaatttttggg 8634222  T
Q  142 tttggttaattt--gagagtttttggagatttgagatgagaaatgagg 187  Q
    ||||| | ||||  ||||| |||| ||||||| |||||||||||||||    
T  8634223 tttgggtgatttgagagagatttttgagattttagatgagaaatgagg 8634270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 31 - 158
Target Start/End: Complemental strand, 43687732 - 43687605
Alignment:
Q  31 taatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctga 129  Q
    |||||||| ||||||||| |||||||||||||||||| ||||||||| ||||||||| | || |||||| |||||||||||||||| ||||||||| |||    
T  43687732 taatttaaaaggaaaaatctaacatataaacataaaatgttaatgatgtttgattatta-aagttactttttattggagtgttgtttgatttgaacttga 43687634  T
Q  130 agaaaataaggatttggttaatttgagag 158  Q
    || || |  | |||||||| |||||||||    
T  43687633 aggaattttgaatttggttgatttgagag 43687605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 53 - 185
Target Start/End: Complemental strand, 53561369 - 53561233
Alignment:
Q  53 catataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctgaagaaaataaggatttggttaat 151  Q
    |||||||| ||||||| |||||||| |||||| |||| |||| ||||||||||||||||||||| ||||||||| ||||| || |  |||||||| | ||    
T  53561369 catataaatataaaaggttaatgatgtttgatcatgaaaactcacttgttattggagtgttgtttgatttgaacttgaaggaattttggatttgggtgat 53561270  T
Q  152 ttgagag---tttttggagatttgagatgagaaatga 185  Q
    |||||||   ||||| ||||||| |||||||||||||    
T  53561269 ttgagagagattttttgagattttagatgagaaatga 53561233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 28 - 130
Target Start/End: Original strand, 36722071 - 36722173
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 126  Q
    |||||||||| ||| |||||| |||||||||||||||||| ||||||| | |||||| |||| |||||||||||||||||||||||||| |||| ||||     
T  36722071 ttctaatttatgag-aaaaatataacatataaacataaaatgttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgattcgaact 36722169  T
Q  127 tgaa 130  Q
    ||||    
T  36722170 tgaa 36722173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 134
Target Start/End: Original strand, 29635503 - 29635602
Alignment:
Q  36 taagaggaaaaatttaacatataaacataaaagtt-aatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctgaagaaa 134  Q
    ||||||||||||| |||||||||||||||||| || |||| || |||||||| | ||||||||| ||||||||||||||   ||||||||  ||||||||    
T  29635503 taagaggaaaaatgtaacatataaacataaaatttcaatggtacttgattataaaaacttactttttattggagtgttgactgatttgaatttgaagaaa 29635602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 272 - 361
Target Start/End: Original strand, 7634451 - 7634541
Alignment:
Q  272 tttaacacatgtgtgacttaactcacactgggaacattttcggaagtttgattggaagtgagtaaaacttgttggaaga--agagcattttt 361  Q
    ||||||| |||||||||||||||||| ||||    ||||||||||||||| |||| |||||| |||||||||||| |||  |||||||||||    
T  7634451 tttaacatatgtgtgacttaactcacgctggaggtattttcggaagtttggttgg-agtgagaaaaacttgttgggagatcagagcattttt 7634541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 31 - 134
Target Start/End: Original strand, 3163217 - 3163321
Alignment:
Q  31 taatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctga 129  Q
    |||||||||| ||||||| |||||||||||||||||| || | || || | |||||||| ||||| |||||||||  |||| || | ||||||||  |||    
T  3163217 taatttaagaagaaaaatgtaacatataaacataaaatgtaattggtaatggattatgaaaacttccttgttattaaagtggtgattgatttgaatttga 3163316  T
Q  130 agaaa 134  Q
    |||||    
T  3163317 agaaa 3163321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 1e-58; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 29 - 239
Target Start/End: Complemental strand, 31931208 - 31930994
Alignment:
Q  29 tctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacct 127  Q
    ||||||| |||||||||||| ||||||||||||||||||| |||||| | ||||||||||| |||||||||||||||||||||||||||||||||||| |    
T  31931208 tctaattgaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 31931109  T
Q  128 gaagaaaataaggatttggttaattt--gagagtttttggagatttgagatgagaaatgaggaaatgagctgc-tgtctgacctttaaaagggtacacaa 224  Q
    ||||||| || |||||| ||| ||||  ||||||||||||||||||||||||||||||||||||||||| ||| ||| || |||||||||||  ||||      
T  31931108 gaagaaattagggatttcgttgatttgagagagtttttggagatttgagatgagaaatgaggaaatgagttgcttgtatggcctttaaaaggacacacgg 31931009  T
Q  225 tgtgacttaactcac 239  Q
     ||||||||||||||    
T  31931008 cgtgacttaactcac 31930994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 29 - 214
Target Start/End: Complemental strand, 42420662 - 42420474
Alignment:
Q  29 tctaatttaagaggaaaaatttaacatataaacataaaa--gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 126  Q
    |||||||||||||||||||| ||||||||||||||||||  ||||||| | ||||||||||| |||||||||||||||||| ||||||| |||||||||     
T  42420662 tctaatttaagaggaaaaatgtaacatataaacataaaaaggttaatggtgtttgattatgaaaacttacttgttattggaatgttgtttgatttgaact 42420563  T
Q  127 tgaagaaaataaggatttggttaattt--gagagtttttggagatttgagatgagaaatgaggaaatgagctgctgtctgacctttaaaa 214  Q
    |||||  |||  |||||||| | ||||  ||||| |||||||||||| ||||| |||||||| ||||  | | |||||||||||||||||    
T  42420562 tgaag-gaatttggatttgggtgatttgagagagattttggagattttagatgggaaatgagaaaatagggttctgtctgacctttaaaa 42420474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 28 - 193
Target Start/End: Complemental strand, 18412103 - 18411935
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 126  Q
    |||||||||||||| |||||| ||||||||||||||||||| |||||| | ||||||||||| ||||||||||||| |||||||| ||| |||||||||     
T  18412103 ttctaatttaagagaaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttaatggagtgtggtttgatttgaact 18412004  T
Q  127 tgaagaaaataaggatttggttaatttgagag--tttttggagatttgagatgagaaatgaggaaatga 193  Q
    |||||||| |  | |||||| |||||||||||   |||| ||||||| ||||| |||||||||||||||    
T  18412003 tgaagaaattttgaatttgggtaatttgagagaaatttttgagattttagatgggaaatgaggaaatga 18411935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 29 - 204
Target Start/End: Complemental strand, 13850377 - 13850199
Alignment:
Q  29 tctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacct 127  Q
    ||||||||||||| |||||| ||||||||||||||||||| |||||| | ||||||||||| |||||||||||||  |||||| |||| ||||||||| |    
T  13850377 tctaatttaagagaaaaaatctaacatataaacataaaagcttaatggtgtttgattatgaaaacttacttgttaagggagtgatgtttgatttgaactt 13850278  T
Q  128 gaagaaaataaggatttggttaatttgagag--tttttggagatttgagatgagaaatgaggaaatgagctgctgtctg 204  Q
    |||| || |  |||||||| | |||||||||   |||||||||||| |||||| || |||||||||||| || ||||||    
T  13850277 gaaggaattttggatttgggtgatttgagagacattttggagattttagatgaaaagtgaggaaatgaggtgttgtctg 13850199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 43 - 158
Target Start/End: Complemental strand, 17210764 - 17210648
Alignment:
Q  43 aaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctgaagaaaataagga 141  Q
    |||||| ||||||||||||||||||| |||||| | ||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||| |  |||    
T  17210764 aaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaacttgaagaaattttgga 17210665  T
Q  142 tttggttaatttgagag 158  Q
    ||||| |||||||||||    
T  17210664 tttgggtaatttgagag 17210648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 28 - 194
Target Start/End: Original strand, 14331416 - 14331584
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 126  Q
    |||||||||| ||| |||||| ||||||||||||||||||| |||||| | |||||| |||| |||||||||||||||||||||||||| |||||| |||    
T  14331416 ttctaatttatgag-aaaaatataacatataaacataaaaggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttggacc 14331514  T
Q  127 tgaagaaaataaggatttggttaattt--gagagtttttggagatttgagatgagaaatgaggaaatgag 194  Q
    ||||| || |   ||||||  | ||||  ||||| |||| ||||||| ||||||||||||||||||||||    
T  14331515 tgaaggaattttagatttgagtgatttgagagagatttttgagattttagatgagaaatgaggaaatgag 14331584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 28 - 194
Target Start/End: Complemental strand, 24606246 - 24606077
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 126  Q
    |||||||||||||| |||||| ||||||||||||||||||| |||||  | ||||||||||| ||||||||||||||| |||||||||| |||||||||     
T  24606246 ttctaatttaagagaaaaaatctaacatataaacataaaaggttaattgtgtttgattatgaaaacttacttgttattagagtgttgtttgatttgaact 24606147  T
Q  127 tgaagaaaataaggatttggttaatttgag--agtttttggagatttgagatgagaaatgaggaaatgag 194  Q
    ||||| || |  |||||||  | ||| |||  || |||| ||||||| | ||||||||||||||||||||    
T  24606146 tgaaggaattttggatttgagtgattagagatagatttttgagattttatatgagaaatgaggaaatgag 24606077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 29 - 190
Target Start/End: Complemental strand, 13865904 - 13865740
Alignment:
Q  29 tctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacct 127  Q
    ||||||||||||| |||||| ||||||||||||||||||| |||||| | ||||||||||| ||||||||||||| ||||||| |||| ||||| ||| |    
T  13865904 tctaatttaagagaaaaaatctaacatataaacataaaagcttaatggtgtttgattatgaaaacttacttgttaatggagtgatgtttgattttaactt 13865805  T
Q  128 gaagaaaataaggatttggttaattt--gagagtttttggagatttgagatgagaaatgaggaaa 190  Q
    |||| || |  |||||||| | ||||  ||||  |||||||||||| ||||||||| ||||||||    
T  13865804 gaaggaattttggatttgggtgatttaagagacattttggagattttagatgagaagtgaggaaa 13865740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 43 - 194
Target Start/End: Complemental strand, 31323811 - 31323658
Alignment:
Q  43 aaaaatttaacatataaacataaaagt-taatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctgaagaaaataagga 141  Q
    |||||| |||||||||||||||||||  ||||| | ||||||||||| ||||||||||||| |||||||||||| ||||||||  ||||| || |  |||    
T  31323811 aaaaatctaacatataaacataaaagcctaatggtgtttgattatgaaaacttacttgttaatggagtgttgtttgatttgaatttgaaggaattttgga 31323712  T
Q  142 tttggttaatt-tgagagtttttggagatttgagatgagaaatgaggaaatgag 194  Q
    ||||| | |||  ||||| |||||||||||| ||||||||||||||||||||||    
T  31323711 tttgggtgattgagagagattttggagattttagatgagaaatgaggaaatgag 31323658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 28 - 131
Target Start/End: Original strand, 31825324 - 31825428
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 126  Q
    |||||||||||||| |||||| ||||||||||||||||||| |||||| | |||||| |||| |||||||||||||||||||||||||| |||||||||     
T  31825324 ttctaatttaagagaaaaaatctaacatataaacataaaaggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaact 31825423  T
Q  127 tgaag 131  Q
    |||||    
T  31825424 tgaag 31825428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 28 - 131
Target Start/End: Original strand, 31825570 - 31825674
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 126  Q
    |||||||||||||| |||||| ||||||||||||||||||| |||||| | |||||| |||| |||||||||||||||||||||||||| |||||||||     
T  31825570 ttctaatttaagagaaaaaatctaacatataaacataaaaggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaact 31825669  T
Q  127 tgaag 131  Q
    |||||    
T  31825670 tgaag 31825674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 28 - 158
Target Start/End: Complemental strand, 27759144 - 27759013
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 126  Q
    |||||||||||| | |||||| ||||||||||||||||||| |||||| | |||||| |||| |||||||||||||||||||||||||| |||||||||     
T  27759144 ttctaatttaagcgaaaaaatctaacatataaacataaaaggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaact 27759045  T
Q  127 tgaagaaaataaggatttggttaatttgagag 158  Q
    ||||| || |  |||||||| | |||||||||    
T  27759044 tgaaggaattttggatttggatgatttgagag 27759013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 20779649 - 20779743
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggattt 121  Q
    |||||||||||||| |||||| ||||||||||||||||||| |||||| | ||||||||||| |||||||||||||||| ||||||||| |||||    
T  20779649 ttctaatttaagagaaaaaatataacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattgaagtgttgtttgattt 20779743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 28 - 124
Target Start/End: Complemental strand, 44099976 - 44099879
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaa 124  Q
    ||||||||||||||||||||| ||||||||||||||||||  | |||| || |||||| ||| |||||||||||||||||||||||||| ||||||||    
T  44099976 ttctaatttaagaggaaaaatgtaacatataaacataaaatatcaatggtacttgattgtgaaaacttacttgttattggagtgttgtttgatttgaa 44099879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 28 - 131
Target Start/End: Original strand, 32938576 - 32938680
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaagttaa-tgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 126  Q
    |||||||||||||  |||||| |||||||||||||| |||| ||| |||| ||||||||||| ||||||||||| |||||||||||||| |||||||||     
T  32938576 ttctaatttaagacaaaaaatctaacatataaacattaaaggtaaatgatgtttgattatgaaaacttacttgtgattggagtgttgtttgatttgaact 32938675  T
Q  127 tgaag 131  Q
    |||||    
T  32938676 tgaag 32938680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 43 - 158
Target Start/End: Complemental strand, 21711035 - 21710919
Alignment:
Q  43 aaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctgaagaaaataagga 141  Q
    |||||| ||| ||||||||||||||| |||||| | |||||| |||| |||||||||||||||||||||||||| ||||||||| ||||| || |  |||    
T  21711035 aaaaatataaaatataaacataaaaggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaacttgaaggaattttgga 21710936  T
Q  142 tttggttaatttgagag 158  Q
    ||||| | |||||||||    
T  21710935 tttggatgatttgagag 21710919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 29 - 124
Target Start/End: Original strand, 23125248 - 23125345
Alignment:
Q  29 tctaatttaagaggaaaaatttaacatataaacataaaag--ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaa 124  Q
    ||||||||||||| |||| | |||||||| |||||||||   |||| ||||||||||||||| ||||||||||||||| |||||||||| ||||||||    
T  23125248 tctaatttaagagaaaaattctaacatatcaacataaaaagattaacgatatttgattatgaaaacttacttgttattagagtgttgtttgatttgaa 23125345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 20759714 - 20759792
Alignment:
Q  29 tctaatttaagaggaaaaatttaacatataaacataaaa--gttaatgatatttgattatgataacttacttgttattg 105  Q
    |||||||||||||||||||| ||||||||||| ||||||  ||||||| | ||||||||||| ||||||||||||||||    
T  20759714 tctaatttaagaggaaaaatctaacatataaatataaaaaggttaatggtgtttgattatgaaaacttacttgttattg 20759792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 20766105 - 20766183
Alignment:
Q  29 tctaatttaagaggaaaaatttaacatataaacataaaa--gttaatgatatttgattatgataacttacttgttattg 105  Q
    |||||||||||||||||||| ||||||||||| ||||||  ||||||| | ||||||||||| ||||||||||||||||    
T  20766105 tctaatttaagaggaaaaatctaacatataaatataaaaaggttaatggtgtttgattatgaaaacttacttgttattg 20766183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 56 - 153
Target Start/End: Original strand, 39039485 - 39039583
Alignment:
Q  56 ataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctgaagaaaataaggatttggttaattt 153  Q
    ||||| |||||| ||||||| || || ||||||| |||||||||||||||||||||||| | ||||||||| |||||||| | | ||||||||||||||    
T  39039485 ataaatataaaatgttaatggtacttaattatgaaaacttacttgttattggagtgttggttgatttgaacttgaagaaattgaagatttggttaattt 39039583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 42 - 131
Target Start/End: Complemental strand, 49063461 - 49063371
Alignment:
Q  42 gaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctgaag 131  Q
    |||||||  |||||||||||||||||| |||||| | |||||| |||| |||||||||||||||||| ||||||| ||||||||| |||||    
T  49063461 gaaaaatacaacatataaacataaaaggttaatggtgtttgatcatgaaaacttacttgttattggaatgttgtttgatttgaacttgaag 49063371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 134
Target Start/End: Complemental strand, 12587257 - 12587153
Alignment:
Q  31 taatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctga 129  Q
    ||||||||||||||   | |||||||| ||||||||| ||||||| || | |||||||| |||||||||||||||| |||| |||  ||||||||  |||    
T  12587257 taatttaagaggaacgttgtaacatattaacataaaatgttaatggtaatggattatgaaaacttacttgttattgaagtggtgtctgatttgaatttga 12587158  T
Q  130 agaaa 134  Q
    |||||    
T  12587157 agaaa 12587153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 116; Significance: 1e-58; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 28 - 239
Target Start/End: Original strand, 21760951 - 21761164
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 126  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||||| | ||||||||||| |||||||||||||||||||||||||| |||||||||     
T  21760951 ttctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaact 21761050  T
Q  127 tgaagaaaataaggatttggttaatttgagag--tttttggagatttgagatgagaaatgaggaaatgagctgctgtctgacctttaaaagggtacacaa 224  Q
    ||||| || |  |||||||| | |||||||||  |||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||  || |||    
T  21761051 tgaaggaattttggatttgggtgatttgagagaatttttggagatttgagatgagaaatgaggaaatgagttgctgt-tgagctttaaaaggacacgcaa 21761149  T
Q  225 tgtgacttaactcac 239  Q
    ||||| |||||||||    
T  21761150 tgtgagttaactcac 21761164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 39 - 239
Target Start/End: Complemental strand, 15471180 - 15470976
Alignment:
Q  39 gaggaaaaatttaacatataaacataaaa--gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctgaagaaaat 136  Q
    |||||||||| ||||||||||||||||||  ||||||| | ||||||||||| |||||||||||||||||||||||||| | ||||||| ||||| || |    
T  15471180 gaggaaaaatctaacatataaacataaaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgtttgctttgaacttgaaggaatt 15471081  T
Q  137 aaggatttggttaatttgagagt--ttttggagatttgagatgagaaatgaggaaatgagctgctgtctgacctttaaaagggtacacaatgtgacttaa 234  Q
      |||||||| | |||||||||   |||||||||||| ||||| ||||||||||||||||||  ||||||| |||||||||| ||| ||| |||| ||||    
T  15471080 ttggatttgggtgatttgagagaaattttggagattttagatgggaaatgaggaaatgagcttatgtctgagctttaaaaggatacgcaacgtgagttaa 15470981  T
Q  235 ctcac 239  Q
    |||||    
T  15470980 ctcac 15470976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 31 - 194
Target Start/End: Original strand, 25804143 - 25804309
Alignment:
Q  31 taatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctga 129  Q
    |||||||||||||||||| |||||||||||||||||| |||| || | ||||||||||| |||||| ||||||||||||||||||| ||||||||| |||    
T  25804143 taatttaagaggaaaaatctaacatataaacataaaatgttactggtttttgattatgaaaacttatttgttattggagtgttgtttgatttgaacttga 25804242  T
Q  130 agaaaataaggatttggttaattt--gagagtttttggagatttgagatgagaaatgaggaaatgag 194  Q
    | ||| |||||||||| || ||||  |||||||||| ||||||| ||||| ||||||||||| ||||    
T  25804243 aaaaattaaggatttgattgatttgagagagtttttagagattttagatgtgaaatgaggaattgag 25804309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 28 - 216
Target Start/End: Original strand, 48707492 - 48707682
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 126  Q
    ||||||| ||||||||||||| ||||||||||||||||| | |||||| | ||||||||||| |||||||||||||||||||||||||| ||||| |||     
T  48707492 ttctaatctaagaggaaaaatctaacatataaacataaacggttaatggtgtttgattatgaaaacttacttgttattggagtgttgtttgatttaaact 48707591  T
Q  127 tgaagaaaataaggatttggttaattt--gagagtttttggagatttgagatgagaaatgaggaaatgagctgctgtctgacctttaaaagg 216  Q
    ||||| || |  |||||||||| ||||  ||||| ||||| |||||| ||||| |||| ||||||||||| || ||||| | ||||||||||    
T  48707592 tgaaggaatttcggatttggttgatttgagagagattttgtagattttagatgtgaaa-gaggaaatgagttgttgtctaatctttaaaagg 48707682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 28 - 199
Target Start/End: Original strand, 48569125 - 48569300
Alignment:
Q  28 ttctaatttaagaggaaaaatt-taacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaac 125  Q
    |||||||||||||| ||||| | ||||||||||||||||||| |||||||| |||||| |||| |||||||||||||||||| ||||||| |||||||||    
T  48569125 ttctaatttaagagaaaaaaatctaacatataaacataaaaggttaatgatgtttgatcatgaaaacttacttgttattggaatgttgtttgatttgaac 48569224  T
Q  126 ctgaagaaaataaggatttggttaattt--gagagtttttggagatttgagatgagaaatgaggaaatgagctgct 199  Q
     ||||| || |  |||||| | | ||||  ||||| |||| ||||||| |||||||||||||||||||||| ||||    
T  48569225 ttgaaggaattttggattttggtgatttgagagagatttttgagattttagatgagaaatgaggaaatgaggtgct 48569300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 28 - 131
Target Start/End: Original strand, 21485347 - 21485451
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 126  Q
    ||||||||||||||  ||||||||||||||||||||||||| |||||| | ||||||||||| |||||||||||||||||||||||||| |||||||||     
T  21485347 ttctaatttaagagagaaaatttaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaact 21485446  T
Q  127 tgaag 131  Q
    |||||    
T  21485447 tgaag 21485451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 29 - 268
Target Start/End: Complemental strand, 26088969 - 26088731
Alignment:
Q  29 tctaatttaagaggaaaaatttaacatataaacataaaagttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctg 128  Q
    |||||||||||||||||||| ||||||| | | | ||| ||||||| | ||||||||||| || |||||||||||||| |||||||| ||||||||  ||    
T  26088969 tctaatttaagaggaaaaatctaacataaacataaaaaggttaatggtgtttgattatgaaaatttacttgttattggtgtgttgtttgatttgaagttg 26088870  T
Q  129 aagaaaataaggatttggttaattt--gagagtttttggagatttgagatgagaaatgaggaaatgagctgctgtctgacctttaaaagggtacacaatg 226  Q
    ||| || |  |||||||| | ||||  ||||| ||||||||||   |||||||||||||| ||||||| |  ||||||||||||||||||  || ||  |    
T  26088869 aagtaattttggatttgggtgatttgagagagattttggagat---agatgagaaatgagaaaatgaggttatgtctgacctttaaaaggacacgcagcg 26088773  T
Q  227 tgacttaactcacattggcctttggcgtgatttaactcacgc 268  Q
    ||| ||||||  |  |||||||  ||||||||||||||||||    
T  26088772 tgagttaacttgcgctggccttctgcgtgatttaactcacgc 26088731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 28 - 131
Target Start/End: Original strand, 49599570 - 49599674
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 126  Q
    |||||||||||||| |||||| ||||||||||||||||||| |||||| | ||||||||||| |||||||||||||||||||||||||| |||||||||     
T  49599570 ttctaatttaagagaaaaaatctaacatataaacataaaaggttaatggtctttgattatgaaaacttacttgttattggagtgttgtttgatttgaact 49599669  T
Q  127 tgaag 131  Q
    |||||    
T  49599670 tgaag 49599674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 28 - 158
Target Start/End: Complemental strand, 3658153 - 3658022
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 126  Q
    ||||||||| |||| |||||| |||||||||||||||||| ||||||||| |||||| |||| |||||||||||||||||||||||||| |||||||||     
T  3658153 ttctaattttagagaaaaaatctaacatataaacataaaatgttaatgatgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaact 3658054  T
Q  127 tgaagaaaataaggatttggttaatttgagag 158  Q
    ||||| || |  |||||||| | |||||||||    
T  3658053 tgaaggaattttggatttgggtgatttgagag 3658022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 28 - 134
Target Start/End: Complemental strand, 34335835 - 34335728
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 126  Q
    ||||||||||||||||||||| || ||||||||||||||| ||||||| || |||||||||| |||||||||||||||||||||||| | |||||||||     
T  34335835 ttctaatttaagaggaaaaatgtagcatataaacataaaatgttaatggtacttgattatgaaaacttacttgttattggagtgttggttgatttgaact 34335736  T
Q  127 tgaagaaa 134  Q
    ||||||||    
T  34335735 tgaagaaa 34335728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 28 - 131
Target Start/End: Original strand, 41875599 - 41875703
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 126  Q
    |||||||||||||| ||||||  |||||||||||||||||| |||||||| |||||| |||| |||||||||||||||||||||||||| |||||||||     
T  41875599 ttctaatttaagagaaaaaatccaacatataaacataaaaggttaatgatgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaact 41875698  T
Q  127 tgaag 131  Q
    |||||    
T  41875699 tgaag 41875703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 28 - 177
Target Start/End: Complemental strand, 27799250 - 27799099
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaagttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacct 127  Q
    ||||||||||| ||||||||| |||||||||||||||||  |||||| || |||||||||| |||||||||||||||| ||||||| | ||||||||| |    
T  27799250 ttctaatttaaaaggaaaaatgtaacatataaacataaatattaatggtacttgattatgaaaacttacttgttattgaagtgttggttgatttgaactt 27799151  T
Q  128 gaagaaaataaggatttggttaattt--gagagtttttggagatttgagatg 177  Q
    ||| ||| | ||| ||||| | ||||  ||||| |||| ||||||| |||||    
T  27799150 gaaaaaattgaggttttggatgatttaagagagattttagagattttagatg 27799099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 28 - 130
Target Start/End: Complemental strand, 5764697 - 5764594
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 126  Q
    |||||||||||||| |||||| ||||||||||||||||||| |||||| | ||||||||||| |||||||||||||||||| ||||||  |||||||||     
T  5764697 ttctaatttaagagaaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggattgttgtgtgatttgaact 5764598  T
Q  127 tgaa 130  Q
    ||||    
T  5764597 tgaa 5764594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 28 - 193
Target Start/End: Complemental strand, 27259557 - 27259390
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 126  Q
    ||||||||||||||||||||| ||||||||||| |||||| ||||||| | ||||||||||| |||||| |||||| |||||| ||||| ||||| |||     
T  27259557 ttctaatttaagaggaaaaatctaacatataaatataaaaggttaatgttgtttgattatgaaaacttagttgttactggagtattgtttgattttaact 27259458  T
Q  127 tgaagaaaataaggatttggttaatt--tgagagtttttggagatttgagatgagaaatgaggaaatga 193  Q
    ||||  || |  |||||||||| |||   ||||| |||||||||||| ||||| |||| ||||||||||    
T  27259457 tgaaagaattttggatttggttgattagggagagattttggagattttagatgtgaaa-gaggaaatga 27259390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 28 - 187
Target Start/End: Complemental strand, 18169519 - 18169358
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 126  Q
    |||||||||| ||| |||||| ||||||||||||||||||| |||| | | |||||| |||| |||||||||||||||||||| ||||| |||||||||     
T  18169519 ttctaatttatgag-aaaaatataacatataaacataaaaggttaagggtgtttgatcatgaaaacttacttgttattggagtattgtttgatttgaaca 18169421  T
Q  127 tgaagaaaataaggatttggttaattt--gagagtttttggagatttgagatgagaaatgagg 187  Q
    ||||| || |  |||||||| | ||||  ||||| |||| ||||||| | |||||||||||||    
T  18169420 tgaaggaattttggatttgggtgatttgagagagatttttgagattttatatgagaaatgagg 18169358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 42 - 131
Target Start/End: Original strand, 39224935 - 39225025
Alignment:
Q  42 gaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctgaag 131  Q
    ||||||| ||||||||||||||||||| |||||| | |||||| |||| |||||||||||||||||||||||||| ||||||||| |||||    
T  39224935 gaaaaatataacatataaacataaaaggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaacttgaag 39225025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 253 - 362
Target Start/End: Original strand, 21761151 - 21761260
Alignment:
Q  253 gtgatttaactcacgctgatttaacacatgtgtgacttaactcacactgggaacattttcggaagtttgattggaagtgagtaaaacttgttggaagaag 352  Q
    |||| ||||||||||||| ||||||||||| |||| ||||||||| |||||  ||||||  ||||||||  || ||||||  ||||||||||||||||||    
T  21761151 gtgagttaactcacgctggtttaacacatgcgtgagttaactcacgctgggggcatttttagaagtttggctgtaagtgaacaaaacttgttggaagaag 21761250  T
Q  353 agcatttttc 362  Q
    ||||||||||    
T  21761251 agcatttttc 21761260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 28 - 131
Target Start/End: Complemental strand, 18841944 - 18841839
Alignment:
Q  28 ttctaatttaagag-gaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaac 125  Q
    |||||||||||||| ||||||| ||||||||||||||||||| |||||| | ||||||||||| |||||  |||||||||| |||||||| ||||| |||    
T  18841944 ttctaatttaagagagaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttttttgttattggtgtgttgtttgatttaaac 18841845  T
Q  126 ctgaag 131  Q
     |||||    
T  18841844 ttgaag 18841839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 252 - 362
Target Start/End: Complemental strand, 15470990 - 15470880
Alignment:
Q  252 cgtgatttaactcacgctgatttaacacatgtgtgacttaactcacactgggaacattttcggaagtttgattggaagtgagtaaaacttgttggaagaa 351  Q
    ||||| ||||||||||||| ||||||||||| |||| ||||||||| || ||   ||||||| ||||||| |||| | | || |||||||||||| ||||    
T  15470990 cgtgagttaactcacgctggtttaacacatgcgtgagttaactcacgctaggggtattttcgaaagtttggttgggaataagcaaaacttgttgggagaa 15470891  T
Q  352 gagcatttttc 362  Q
    |||||||||||    
T  15470890 gagcatttttc 15470880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 185
Target Start/End: Complemental strand, 12025803 - 12025646
Alignment:
Q  30 ctaatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctg 128  Q
    |||||| |||| ||||||| |||||||||||||||||| || ||| ||| |||||||| | || |||| ||||||||| |||||| | ||||||||| ||    
T  12025803 ctaattaaagatgaaaaatgtaacatataaacataaaatgtcaataatacttgattataaaaaattacgtgttattggggtgttggttgatttgaacttg 12025704  T
Q  129 aagaaaataaggatttggttaattt--gagagtttttggagatttgagatgagaaatga 185  Q
    | | ||||  || ||||| | ||||  |||||||||| ||||||| ||||| |||||||    
T  12025703 atg-aaattggggtttggatgatttgagagagtttttagagattttagatgtgaaatga 12025646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 272 - 361
Target Start/End: Complemental strand, 26088707 - 26088618
Alignment:
Q  272 tttaacacatgtgtgacttaactcacactgggaacattttcggaagtttgattggaagtgagtaaaacttgttggaagaagagcattttt 361  Q
    |||||||||||  ||| |||||||||||   |  ||||||||||||||||||||| | |||| |||||||||||| ||||||| ||||||    
T  26088707 tttaacacatgcatgagttaactcacaccatgggcattttcggaagtttgattgggaatgagcaaaacttgttgggagaagagtattttt 26088618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 49599680 - 49599728
Alignment:
Q  151 tttgagagtttttggagatttgagatgagaaatgaggaaatgagctgct 199  Q
    ||||||| ||||| ||||||| |||||||||||||||||||||| ||||    
T  49599680 tttgagatttttttgagattttagatgagaaatgaggaaatgaggtgct 49599728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 7e-48; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 28 - 193
Target Start/End: Complemental strand, 28717707 - 28717537
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatat---aaacataaaagttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaa 124  Q
    |||||||||||||| |||||| ||||||||   ||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||    
T  28717707 ttctaatttaagagaaaaaatctaacatattataaacataaaagttaatgatgtttgattatgaaaacttacttgctattggagtgttgttggatttgaa 28717608  T
Q  125 cctgaagaaaataaggatttggttaattt--gagagtttttggagatttgagatgagaaatgaggaaatga 193  Q
      |||||||| || | |||||||| ||||  ||||||||||||| ||||||||||||||||||||||||||    
T  28717607 attgaagaaattaggaatttggttgatttgagagagtttttggatatttgagatgagaaatgaggaaatga 28717537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 28 - 239
Target Start/End: Complemental strand, 10975447 - 10975234
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 126  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| ||| |||||||||||||||||||| ||||  |||||||||     
T  10975447 ttctaatttaagaggaaaaatctaacatataaacataaaaggttaatgatgtttgattttgaaaacttacttgttattggagtattgtgtgatttgaact 10975348  T
Q  127 tgaagaaaataaggatttggttaatttgagag--tttttggagatttgagatgagaaatgaggaaatgagctgctgtctgacctttaaaagggtacacaa 224  Q
    ||||| || |  |||||||||| |||||||||   |||||||||||| ||| | |||| ||||||||||| ||||||||||  |||||||||  || |||    
T  10975347 tgaaggaattttggatttggttgatttgagagaaattttggagattttagaagtgaaa-gaggaaatgagttgctgtctgatttttaaaaggacacgcaa 10975249  T
Q  225 tgtgacttaactcac 239  Q
      |||||||||||||    
T  10975248 catgacttaactcac 10975234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 28 - 194
Target Start/End: Complemental strand, 2598847 - 2598678
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaagtt-aatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 126  Q
    |||||||||||||| |||||| ||||||||||||||||||||| |||| | ||||||||||| ||||||||||||| |||||||||||| |||||||||     
T  2598847 ttctaatttaagagaaaaaatctaacatataaacataaaagtttaatggtgtttgattatgaaaacttacttgttaatggagtgttgtttgatttgaact 2598748  T
Q  127 tgaagaaaataaggatttggttaatttg--agagtttttggagatttgagatgagaaatgaggaaatgag 194  Q
    | ||| || |  |||||||| | |||||  |||| |||||||||||| |||||| |||||||||||||||    
T  2598747 ttaaggaattttggatttgggtgatttgaaagagattttggagattttagatgaaaaatgaggaaatgag 2598678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 31 - 158
Target Start/End: Original strand, 25361172 - 25361300
Alignment:
Q  31 taatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctga 129  Q
    |||||||||||||||||| ||||||||||||||||||| |||||| | ||||||||||| |||||||||||||||||||||||||||||||||||  |||    
T  25361172 taatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaatttga 25361271  T
Q  130 agaaaataaggatttggttaatttgagag 158  Q
    || || | ||||||| | | |||||||||    
T  25361272 aggaatttaggattttgatgatttgagag 25361300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 28 - 191
Target Start/End: Original strand, 15798667 - 15798834
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaa--gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaac 125  Q
    ||||||| ||||| |||||||  |||||||||||||||||  ||||||| | ||| ||||||| |||||||||||||||||||||||||| ||||| |||    
T  15798667 ttctaatgtaagaagaaaaatccaacatataaacataaaaaggttaatggtgtttcattatgaaaacttacttgttattggagtgttgtttgatttaaac 15798766  T
Q  126 ctgaagaaaataaggatttggttaattt--gagagtttttggagatttgagatgagaaatgaggaaat 191  Q
     ||||| || |  |||||||| | ||||  ||||| |||||||||||| ||||| |||||||||||||    
T  15798767 ttgaaggaattttggatttgggtgatttgagagagattttggagattttagatgggaaatgaggaaat 15798834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 29 - 194
Target Start/End: Original strand, 4113804 - 4113973
Alignment:
Q  29 tctaatttaagaggaaaaatt-taacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 126  Q
    ||||||||||||| ||||| | ||| ||||||||||||||| |||||| | ||||||||||| || ||||||||||||||||||||||| |||||||||     
T  4113804 tctaatttaagagaaaaaaatctaatatataaacataaaaggttaatggtgtttgattatgaaaatttacttgttattggagtgttgtttgatttgaact 4113903  T
Q  127 tgaagaaaataaggatttggttaatttgagag--tttttggagatttgagatgagaaatgaggaaatgag 194  Q
    ||||| || |   ||||||| | | |||||||   |||| ||||||| ||||||||||||||||||||||    
T  4113904 tgaaggaattttagatttgggtgacttgagagatatttttgagattttagatgagaaatgaggaaatgag 4113973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 29 - 124
Target Start/End: Complemental strand, 12805058 - 12804962
Alignment:
Q  29 tctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaa 124  Q
    ||||||||||||| |||||| ||||||||||||||||||| |||||||| ||||||||||| ||||||||||||| | |||||||||| ||||||||    
T  12805058 tctaatttaagagaaaaaatctaacatataaacataaaaggttaatgatgtttgattatgaaaacttacttgttactcgagtgttgtttgatttgaa 12804962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 28 - 158
Target Start/End: Complemental strand, 7081785 - 7081655
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 126  Q
    |||||||||| ||| |||||| ||||||||||||||||||| |||||| | |||||| |||| |||||||||||||||||||||||||| |||||||||     
T  7081785 ttctaatttatgag-aaaaatataacatataaacataaaaggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaact 7081687  T
Q  127 tgaagaaaataaggatttggttaatttgagag 158  Q
    ||||| || |  |||||||| | |||||||||    
T  7081686 tgaaggaattttggatttggatgatttgagag 7081655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 35 - 131
Target Start/End: Original strand, 23229324 - 23229422
Alignment:
Q  35 ttaagaggaaaaatttaacatataaacataaaa--gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctgaag 131  Q
    |||||||||||||| ||||||||||||||||||  ||||||| | ||||||||||| |||||||||||| || |||||||||| ||||||||| |||||    
T  23229324 ttaagaggaaaaatctaacatataaacataaaaaggttaatggtgtttgattatgaaaacttacttgtttttagagtgttgtttgatttgaacttgaag 23229422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 29 - 124
Target Start/End: Original strand, 36317622 - 36317721
Alignment:
Q  29 tctaatttaagaggaa--aaatttaacatataaacataaaa--gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaa 124  Q
    ||||||||||||| ||  |||| |||||||| |||||||||  ||||||| | ||||||||||| |||||||||||||||||||||||||| ||||||||    
T  36317622 tctaatttaagagcaataaaatctaacatatcaacataaaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaa 36317721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 28 - 113
Target Start/End: Original strand, 16418676 - 16418761
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttg 113  Q
    |||||||||||||||||||| |||||||||||||||||||  | |||| || |||||||||| ||||||||||||||| ||||||||    
T  16418676 ttctaatttaagaggaaaaaattaacatataaacataaaatatcaatggtacttgattatga-aacttacttgttattagagtgttg 16418761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 50 - 158
Target Start/End: Complemental strand, 33370115 - 33370006
Alignment:
Q  50 taacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctgaagaaaataaggatttggtt 148  Q
    |||||||||||||||||| ||||||| | ||||||||||| ||||||  |||||||| ||||||||| ||||||||| ||||| || |  |||||||| |    
T  33370115 taacatataaacataaaatgttaatggtgtttgattatgaaaacttagatgttattgaagtgttgtttgatttgaacttgaaggaattttggatttgggt 33370016  T
Q  149 aatttgagag 158  Q
     |||||||||    
T  33370015 gatttgagag 33370006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 131
Target Start/End: Complemental strand, 12742239 - 12742140
Alignment:
Q  29 tctaatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacct 127  Q
    ||||||||||||| |||||| |||||||||||||||||| ||||||| | ||||||||||| |    |||||||| | |||||||||| ||||||||| |    
T  12742239 tctaatttaagagaaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaa----acttgttactcgagtgttgtttgatttgaactt 12742144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 124
Target Start/End: Original strand, 22858328 - 22858396
Alignment:
Q  58 aaacataaaa--gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaa 124  Q
    ||||||||||  ||||||||||||| ||| ||| ||||||||||||||| |||||||||| ||||||||    
T  22858328 aaacataaaaaggttaatgatatttaattttgaaaacttacttgttattagagtgttgtttgatttgaa 22858396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 251 - 297
Target Start/End: Original strand, 19550923 - 19550969
Alignment:
Q  251 gcgtgatttaactcacgctgatttaacacatgtgtgacttaactcac 297  Q
    |||||||||||||||||| ||||||||||||  |||| |||||||||    
T  19550923 gcgtgatttaactcacgccgatttaacacatacgtgagttaactcac 19550969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 252 - 358
Target Start/End: Original strand, 23229501 - 23229606
Alignment:
Q  252 cgtgatttaactcacgctgatttaacacatgtgtgacttaactcacactgggaacattttcggaagtttgattggaagtgagtaaaacttgttggaagaa 351  Q
    ||||| ||||| ||||| || ||||||||||  ||| |||||||||||   ||||||||||||||||||| |||  | |||  ||||  |||||||||||    
T  23229501 cgtgagttaacccacgcagaattaacacatgcatgagttaactcacac-atgaacattttcggaagtttggttgagaatgaacaaaatatgttggaagaa 23229599  T
Q  352 gagcatt 358  Q
    |||||||    
T  23229600 gagcatt 23229606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 1e-43; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 28 - 186
Target Start/End: Original strand, 27318412 - 27318573
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 126  Q
    ||||||||||||| ||||||| ||||||||||| ||||||| |||||||| ||| ||||||| ||||||||||||||||||||||| |||||||| |||     
T  27318412 ttctaatttaagaagaaaaatctaacatataaatataaaaggttaatgatgttttattatgaaaacttacttgttattggagtgttcttggatttcaact 27318511  T
Q  127 tgaagaaaataaggatttggttaattt--gagagtttttggagatttgagatgagaaatgag 186  Q
    |||||||| || |||||||||| || |  |||||||||||||||||||||||||||||||||    
T  27318512 tgaagaaattagggatttggtttatctgagagagtttttggagatttgagatgagaaatgag 27318573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 35 - 297
Target Start/End: Complemental strand, 31267026 - 31266759
Alignment:
Q  35 ttaagaggaaaaatttaacatataaacataaaa--gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctgaaga 132  Q
    |||||||||||| | ||||||||||||||||||  ||||||| | ||||||||||| ||||||| | |||||||||||||||| ||||||||| ||||||    
T  31267026 ttaagaggaaaagtctaacatataaacataaaaaggttaatggtgtttgattatgaaaacttaccttttattggagtgttgtttgatttgaacttgaaga 31266927  T
Q  133 aaataaggatttggttaattt--gagagtttttggaga-tttgagatgagaaatgaggaaatgagctgctgtctgacctttaaaagggtacacaatgtga 229  Q
    || |  |||||||| | ||||  ||||| ||||||||| ||| ||||| |||||||||||||||  |  |||||||| |||||||||  ||||| |||||    
T  31266926 aattttggatttgggtgatttgagagagattttggagattttcagatgggaaatgaggaaatgaagttttgtctgacttttaaaaggacacacagtgtga 31266827  T
Q  230 cttaactcacattggcctttggcgtgatttaactcacgctgatttaacacatgtgtgacttaactcac 297  Q
     |||||| ||  |||||||  |||||| |||| |||||| |  |||||||||| |||| |||||||||    
T  31266826 gttaacttacgctggccttcagcgtgacttaattcacgcaggattaacacatgcgtgagttaactcac 31266759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 28 - 194
Target Start/End: Original strand, 39477756 - 39477924
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 126  Q
    |||||||||| ||| |||||| |||||||||||||||||| ||||||||| |||||| |||| |||||||||||||||||||||||||| |||||||||     
T  39477756 ttctaatttatgag-aaaaatataacatataaacataaaatgttaatgatgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaact 39477854  T
Q  127 tgaagaaaataaggatttggttaattt--gagagtttttggagatttgagatgagaaatgaggaaatgag 194  Q
    ||||| || |  |||||||| | ||||  ||||| |||| ||||||| ||||||||||||||||||||||    
T  39477855 tgaaggaattttggatttgggtgatttgagagagatttttgagattttagatgagaaatgaggaaatgag 39477924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 28 - 190
Target Start/End: Original strand, 8726928 - 8727095
Alignment:
Q  28 ttctaatttaagaggaaaaa--tttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaa 124  Q
    |||||||||||||| |||||  | ||| ||||||||||||||| |||||| | ||||||||||| |||||||||||||||||||||||||| ||||||||    
T  8726928 ttctaatttaagagaaaaaaaatctaagatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaa 8727027  T
Q  125 cctgaagaaaataaggatttggttaattt--gagagtttttggagatttgagatgagaaatgaggaaa 190  Q
    | |||||||| |  |||||||| | ||||  ||||| |||| ||||||| ||||||||||||||||||    
T  8727028 cttgaagaaattttggatttgggtgatttgagagagatttttgagattttagatgagaaatgaggaaa 8727095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 31 - 125
Target Start/End: Original strand, 21615474 - 21615569
Alignment:
Q  31 taatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaac 125  Q
    ||||||||||| |||||| ||||||||||||||| ||| |||||| | ||||||||||| |||||||||||||||| ||||||||| |||||||||    
T  21615474 taatttaagagaaaaaatctaacatataaacatacaaggttaatggtgtttgattatgaaaacttacttgttattgaagtgttgtttgatttgaac 21615569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 51 - 199
Target Start/End: Complemental strand, 18237043 - 18236893
Alignment:
Q  51 aacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctgaagaaaataaggatttggtta 149  Q
    |||||||||||||||||| |||||| | |||||| |||| |||||||||||||||||||||||||| ||||||||  ||||| || |  | |||||| |     
T  18237043 aacatataaacataaaaggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaatttgaaggaattttgaatttgggtg 18236944  T
Q  150 atttgagag-tttttggagatttgagatgagaaatgaggaaatgagctgct 199  Q
    |||||||||  |||| ||||||| ||||||||||||| |||| ||| ||||    
T  18236943 atttgagagagtttttgagattttagatgagaaatgaagaaaggaggtgct 18236893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 28 - 185
Target Start/End: Original strand, 7414582 - 7414743
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaa--gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaac 125  Q
    |||||||||||||| |||| | || ||||||||||||||   || |||| | ||||||||||| |||||||||||||||||||||||||| |||||||||    
T  7414582 ttctaatttaagagcaaaattctagcatataaacataaataggtcaatggtgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaac 7414681  T
Q  126 ctgaagaaaataaggatttggttaatttgag--agtttttggagatttgagatgagaaatga 185  Q
     ||||| || |  | |||||| | |||||||  || |||| ||||||| ||||| |||||||    
T  7414682 ttgaaggaattttgaatttgggtgatttgagaaagatttttgagattttagatgggaaatga 7414743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 29 - 158
Target Start/End: Complemental strand, 13798815 - 13798685
Alignment:
Q  29 tctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacct 127  Q
    ||||||||||||| |||||| ||||||||||||||||||  |||||| | ||||||||||| | |||||||||||||  ||||||||| ||||||||  |    
T  13798815 tctaatttaagagaaaaaatctaacatataaacataaaaaattaatggtgtttgattatgaaagcttacttgttattatagtgttgtttgatttgaattt 13798716  T
Q  128 gaagaaaataaggatttggttaatttgagag 158  Q
    |||| || |  |||||||| | |||||||||    
T  13798715 gaaggaattttggatttggatgatttgagag 13798685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 29 - 124
Target Start/End: Complemental strand, 28065914 - 28065817
Alignment:
Q  29 tctaatttaagaggaaaaatttaacatataaacataaaa--gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaa 124  Q
    ||||||||||||| |||| |  ||||||| |||||||||  ||||||| | ||||||||||| |||||||||||||||||||||||||| ||||||||    
T  28065914 tctaatttaagagaaaaattcaaacatatcaacataaaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaa 28065817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 29 - 124
Target Start/End: Complemental strand, 11823976 - 11823879
Alignment:
Q  29 tctaatttaagaggaaaaatttaacatataaacataaaa--gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaa 124  Q
    ||||||||||||||||||||  ||||||  ||||||||   ||||||||| ||||||||||| | ||||||| |||||||||||||||| ||||||||    
T  11823976 tctaatttaagaggaaaaatcaaacataacaacataaataggttaatgatgtttgattatgaaagcttacttattattggagtgttgtttgatttgaa 11823879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 28 - 131
Target Start/End: Complemental strand, 40592230 - 40592126
Alignment:
Q  28 ttctaatttaagaggaaaaatt-taacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaac 125  Q
    |||||||||||||| ||||| | |||||||||||||||||| ||||||| | |||||| ||  ||||||||||||||||| ||||||||| |||||||||    
T  40592230 ttctaatttaagagaaaaaaatataacatataaacataaaaagttaatggtgtttgatcatt-taacttacttgttattgaagtgttgtttgatttgaac 40592132  T
Q  126 ctgaag 131  Q
     |||||    
T  40592131 ttgaag 40592126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 69 - 186
Target Start/End: Original strand, 16887077 - 16887196
Alignment:
Q  69 ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctgaagaaaataaggatttggttaatt--tgagagtttttgga 166  Q
    |||||| | ||||||||||| |||||||||||||||| |||| ||||  | |||||| | |||||| ||||||||||||| |||  ||||||||||||||    
T  16887077 ttaatggtgtttgattatgaaaacttacttgttattgaagtgctgtttaaattgaacttaaagaaattaaggatttggtttatttatgagagtttttgga 16887176  T
Q  167 gatttgagatgagaaatgag 186  Q
    |||   ||||| ||||||||    
T  16887177 gataatagatgtgaaatgag 16887196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 36 - 121
Target Start/End: Complemental strand, 12082549 - 12082462
Alignment:
Q  36 taagaggaaaaatttaacatataaacataaaa--gttaatgatatttgattatgataacttacttgttattggagtgttgttggattt 121  Q
    |||||| |||||| ||| |||| |||||||||  ||||||| | || |||||||| |||||||||||||||||||||||||| |||||    
T  12082549 taagagaaaaaatctaatatatcaacataaaaaggttaatggtgttggattatgaaaacttacttgttattggagtgttgtttgattt 12082462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 121
Target Start/End: Complemental strand, 18146446 - 18146354
Alignment:
Q  31 taatttaagaggaaaaatttaacatataaacataaaa--gttaatgatatttgattatgataacttacttgttattggagtgttgttggattt 121  Q
    ||||||||| | |||||| || ||||  |||||||||  ||||||| | | ||||||||| |||||||||||||||||||||||||| |||||    
T  18146446 taatttaagtgaaaaaatctatcataccaacataaaaaggttaatggtgtatgattatgaaaacttacttgttattggagtgttgtttgattt 18146354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 47268407 - 47268346
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatga 88  Q
    ||||||||||| || || ||| |||||||||||||||||| ||||||| |||||||| ||||    
T  47268407 ttctaatttaaaagaaagaatctaacatataaacataaaaggttaatggtatttgatcatga 47268346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 3e-41; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 28 - 216
Target Start/End: Original strand, 26618053 - 26618244
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaa--gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaac 125  Q
    |||||||||||||| |||||| ||||||||||||||||||  ||||||||| ||||||||||| |||||||||| ||||||||||||||| |||||||||    
T  26618053 ttctaatttaagagaaaaaatctaacatataaacataaaaaggttaatgatgtttgattatgaaaacttacttgctattggagtgttgtttgatttgaac 26618152  T
Q  126 ctgaagaaaataaggatttggttaattt--gagagtttttggagatttgagatgagaaatgaggaaatgagctgctgtctgacctttaaaagg 216  Q
     ||||| || |  |||||||| | ||||  ||||| |||||||||||| ||||| |||| ||||||||||| |  ||||||||||||||||||    
T  26618153 ttgaaggaattttggatttggatgatttgagagagattttggagattttagatgtgaaa-gaggaaatgaggttatgtctgacctttaaaagg 26618244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 28 - 189
Target Start/End: Original strand, 21557333 - 21557497
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 126  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||| |||| |||||||||     
T  21557333 ttctaatttaagaggaaaaatctaacatataaacataaaatgttaatgatgtttgattatgacaacttacttgttattggagtgctgtttgatttgaact 21557432  T
Q  127 tgaagaaaataaggatttggttaattt--gagagtttttggagatttgagatgagaaatgaggaa 189  Q
    |||||||| ||   |||||| | ||||  ||||||||||  | | ||| ||||||||||||||||    
T  21557433 tgaagaaattagaaatttggatgatttgagagagtttttaaatagttgggatgagaaatgaggaa 21557497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 28 - 184
Target Start/End: Complemental strand, 40500929 - 40500770
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 126  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||| |||||| |||||||| |||||||| | ||||| |||     
T  40500929 ttctaatttaagaggaaaaatgtaacatataaacataaaatgttaatgatacttgattatgaaaacttaattgttatttgagtgttggttgatttaaact 40500830  T
Q  127 tgaagaaaataaggatttggttaattt--gagagtttttggagatttgagatgagaaatg 184  Q
    |||||||| |  |||| ||||| ||||  ||||||||||  |||||| ||||| ||||||    
T  40500829 tgaagaaattggggatatggttgatttgagagagtttttaaagattttagatgtgaaatg 40500770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 28 - 131
Target Start/End: Complemental strand, 20147617 - 20147513
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 126  Q
    |||||||||||||| |||||| ||||||||||||||||||| |||||| | ||||||||||| ||||||||| |||||||||||||||| |||||||||     
T  20147617 ttctaatttaagagaaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttattattggagtgttgtttgatttgaact 20147518  T
Q  127 tgaag 131  Q
    |||||    
T  20147517 tgaag 20147513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 28 - 131
Target Start/End: Complemental strand, 29110665 - 29110561
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 126  Q
    |||||||||||||| |||||| ||||||||||||||||||| |||||| | ||||||||||| |||||| ||||||||||||||||||| |||||||||     
T  29110665 ttctaatttaagagaaaaaatataacatataaacataaaaggttaatggtgtttgattatgaaaacttatttgttattggagtgttgtttgatttgaact 29110566  T
Q  127 tgaag 131  Q
    |||||    
T  29110565 tgaag 29110561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 28 - 158
Target Start/End: Complemental strand, 16706322 - 16706191
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 126  Q
    |||||||||||||| |||||| ||||||||||||||||||| |||||| | |||||| |||| ||||||| |||||||||||||||||| |||||||||     
T  16706322 ttctaatttaagagaaaaaatctaacatataaacataaaaggttaatggtgtttgataatgaaaacttacgtgttattggagtgttgtttgatttgaact 16706223  T
Q  127 tgaagaaaataaggatttggttaatttgagag 158  Q
    ||||| || |  |||||||| | |||||||||    
T  16706222 tgaaggaattttggatttgggtgatttgagag 16706191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 43 - 194
Target Start/End: Complemental strand, 32734267 - 32734113
Alignment:
Q  43 aaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctgaagaaaataagga 141  Q
    |||||| |||||| |||||||||||| |||||| | |||||| |||| |||||||||||||||||||| ||||| ||||||||| ||||| || |  |||    
T  32734267 aaaaatctaacatgtaaacataaaaggttaatggtgtttgatcatgaaaacttacttgttattggagtattgtttgatttgaacttgaaggaattttgga 32734168  T
Q  142 tttggttaattt--gagagtttttggagatttgagatgagaaatgaggaaatgag 194  Q
    ||||| | ||||  ||||| |||| ||||||| ||||||||||||||||||||||    
T  32734167 tttgggtgatttgagagagatttttgagattttagatgagaaatgaggaaatgag 32734113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 28 - 134
Target Start/End: Original strand, 5307063 - 5307170
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 126  Q
    ||||||||| ||||||||||| |||||||||||||||||| || |||  || |||||||||| |||||||||||||||||||||||| | |||||||||     
T  5307063 ttctaatttcagaggaaaaatgtaacatataaacataaaatgtcaatagtacttgattatgaaaacttacttgttattggagtgttggttgatttgaact 5307162  T
Q  127 tgaagaaa 134  Q
    ||||||||    
T  5307163 tgaagaaa 5307170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 43 - 131
Target Start/End: Complemental strand, 29906064 - 29905975
Alignment:
Q  43 aaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctgaag 131  Q
    |||||| ||||||||||||||||||| |||||| | |||||| |||| |||||||||||||||||||||||||| ||||||||| |||||    
T  29906064 aaaaatctaacatataaacataaaaggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaacttgaag 29905975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 29 - 112
Target Start/End: Complemental strand, 18878141 - 18878056
Alignment:
Q  29 tctaatttaagaggaaaaatttaacatataaacataaaa--gttaatgatatttgattatgataacttacttgttattggagtgtt 112  Q
    |||||||||||||||||||  ||||||||||||||||||  ||||||| | ||||||||||| ||||||||||| |||||||||||    
T  18878141 tctaatttaagaggaaaaagctaacatataaacataaaaaagttaatggtgtttgattatgaaaacttacttgtgattggagtgtt 18878056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 28 - 158
Target Start/End: Original strand, 42241808 - 42241938
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 126  Q
    |||||||||| ||| ||||||  |||||||||||||||||| |||||| | |||||| |||| |||||| ||||||||||||||||||| |||||||||     
T  42241808 ttctaatttatgag-aaaaatacaacatataaacataaaaggttaatggtgtttgatcatgaaaacttaattgttattggagtgttgtttgatttgaact 42241906  T
Q  127 tgaagaaaataaggatttggttaatttgagag 158  Q
    | ||| || |  |||||||| | |||||||||    
T  42241907 taaaggaattttggatttgggtgatttgagag 42241938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 306 - 362
Target Start/End: Complemental strand, 5726898 - 5726842
Alignment:
Q  306 cattttcggaagtttgattggaagtgagtaaaacttgttggaagaagagcatttttc 362  Q
    |||||||||||||||| |||  |||||||||||||||||||||||||||||||||||    
T  5726898 cattttcggaagtttggttgtgagtgagtaaaacttgttggaagaagagcatttttc 5726842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 37058538 - 37058464
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgtt 101  Q
    ||||||||||||||||||||| |||||||||||||||||| || |||| || | |||||||| ||||||||||||    
T  37058538 ttctaatttaagaggaaaaatgtaacatataaacataaaatgtcaatggtaatggattatgaaaacttacttgtt 37058464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 27651379 - 27651461
Alignment:
Q  43 aaaaatttaacatataaacataaaag--ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttga 123  Q
    |||||| |||||||| |||||||||   |||||| ||||||||||||| ||||||||| |||||||| ||||||| |||||||    
T  27651379 aaaaatctaacatatcaacataaaaagattaatggtatttgattatgaaaacttacttattattggaatgttgtttgatttga 27651461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 272 - 362
Target Start/End: Complemental strand, 11805009 - 11804919
Alignment:
Q  272 tttaacacatgtgtgacttaactcacactgggaacattttcggaagtttgattggaagtgagtaaaacttgttggaagaagagcatttttc 362  Q
    ||||| |||||||||| ||||||||| || ||   ||||||| ||||||| || | ||| ||||||||||| ||| |||||||||||||||    
T  11805009 tttaatacatgtgtgagttaactcacgctaggggtattttcgaaagtttggttaggagtaagtaaaacttgctgggagaagagcatttttc 11804919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 67
Target Start/End: Original strand, 20530344 - 20530383
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaa 67  Q
    |||||||| |||||||||||| ||||||||||||||||||    
T  20530344 ttctaattaaagaggaaaaatgtaacatataaacataaaa 20530383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 307 - 362
Target Start/End: Original strand, 34233636 - 34233691
Alignment:
Q  307 attttcggaagtttgattggaagtgagtaaaacttgttggaagaagagcatttttc 362  Q
    ||||| ||||||||| ||||||||||| ||||| || ||||||||||| |||||||    
T  34233636 attttgggaagtttggttggaagtgagcaaaacgtgatggaagaagagaatttttc 34233691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 1e-40; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 29 - 233
Target Start/End: Complemental strand, 24559496 - 24559282
Alignment:
Q  29 tctaatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacct 127  Q
    ||||||||||||||||| || |||||||||||||||||| ||||||  | ||||||||||| |||||||||||||||| ||||||||| |||||||||      
T  24559496 tctaatttaagaggaaatatctaacatataaacataaaatgttaatagtgtttgattatgaaaacttacttgttattgaagtgttgtttgatttgaactg 24559397  T
Q  128 gaagaaaataaggatttggttaatttg--agagtttttggagatttgagatg-------agaaatgaggaaatgagctgctgtctgacctttaaaagggt 218  Q
    ||||||| || |||||||||| |||||  ||||||||||||||||| |||||        ||||||||||||| ||||| ||||||| ||||||||||      
T  24559396 gaagaaattagggatttggttgatttgaaagagtttttggagattttagatgtgaaagaggaaatgaggaaataagctgttgtctgatctttaaaaggac 24559297  T
Q  219 acacaatgtgactta 233  Q
    || ||||||||||||    
T  24559296 acgcaatgtgactta 24559282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 28 - 199
Target Start/End: Complemental strand, 800664 - 800489
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 126  Q
    ||||||||| |||| |||||| ||||||  ||||||||| | |||||| | |||||| |||| |||||||||||||||||||||||||| |||||||||     
T  800664 ttctaattttagagaaaaaatctaacatgcaaacataaatggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaact 800565  T
Q  127 tgaagaaaataaggatttggttaatttgagag---tttttggagatttgagatgagaaatgaggaaatgagctgct 199  Q
    ||||| || |  |||||||| | |||||||||   ||||| ||||||| |||||||||||||||||||||||||||    
T  800564 tgaaggaattttggatttgggtgatttgagagagattttttgagattttagatgagaaatgaggaaatgagctgct 800489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 31 - 241
Target Start/End: Complemental strand, 20243804 - 20243598
Alignment:
Q  31 taatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctga 129  Q
    |||||||||| ||||||| |||||||||||| ||||| ||||| | ||||||||||||  ||||||       ||||||||||| | ||||||||| |||    
T  20243804 taatttaagaagaaaaatctaacatataaacctaaaatgttaaaggtatttgattatgtaaactta-------ttggagtgttggttgatttgaacttga 20243712  T
Q  130 agaaaataaggatttggttaatttgagagtttttg--gagatttgagatgagaaatgaggaaatgagctgctgtctgacctttaaaagggtacacaatgt 227  Q
    ||||| ||  ||||| ||| |||||||||  ||||  ||||||| | ||| |||||||||||||||| || |||||||  ||||||||| ||||||| ||    
T  20243711 agaaattagagatttagttgatttgagagagtttgtagagattttaaatgtgaaatgaggaaatgagttgttgtctgatttttaaaaggatacacaacgt 20243612  T
Q  228 gacttaactcacat 241  Q
    ||||||||||||||    
T  20243611 gacttaactcacat 20243598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 31 - 241
Target Start/End: Complemental strand, 22137788 - 22137582
Alignment:
Q  31 taatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctga 129  Q
    |||||||||| ||||||| |||||||||||| ||||| ||||| | ||||||||||||  ||||||       ||||||||||| | ||||||||| |||    
T  22137788 taatttaagaagaaaaatctaacatataaacctaaaatgttaaaggtatttgattatgtaaactta-------ttggagtgttggttgatttgaacttga 22137696  T
Q  130 agaaaataaggatttggttaatttgagagtttttg--gagatttgagatgagaaatgaggaaatgagctgctgtctgacctttaaaagggtacacaatgt 227  Q
    ||||| ||  ||||| ||| |||||||||  ||||  ||||||| | ||| |||||||||||||||| || |||||||  ||||||||| ||||||| ||    
T  22137695 agaaattagagatttagttgatttgagagagtttgtagagattttaaatgtgaaatgaggaaatgagttgttgtctgatttttaaaaggatacacaacgt 22137596  T
Q  228 gacttaactcacat 241  Q
    ||||||||||||||    
T  22137595 gacttaactcacat 22137582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 31 - 215
Target Start/End: Complemental strand, 5570767 - 5570582
Alignment:
Q  31 taatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctga 129  Q
    |||||||||||||||||| |||||||||||||||||| |||||||   |||||||| || |||||||||||||||||||||||||| ||||||||| |||    
T  5570767 taatttaagaggaaaaatctaacatataaacataaaatgttaatgtcgtttgattacgaaaacttacttgttattggagtgttgtttgatttgaacttga 5570668  T
Q  130 agaaaataaggatttggttaatttgagagtttttggagatttgagatgagaaatgaggaaatgagctgctgtctgacctttaaaag 215  Q
    |  || || | |||||| | ||||||||    ||  |||| ||| |  ||||||||||||||||| || ||||||  |||||||||    
T  5570667 aagaattatgaatttgggtgatttgagaaagattttagatgtgaaaaaagaaatgaggaaatgagttgatgtctggtctttaaaag 5570582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 29 - 125
Target Start/End: Original strand, 3098084 - 3098182
Alignment:
Q  29 tctaatttaagaggaaaaatttaacatataaacataaaa--gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaac 125  Q
    ||||||||||||| |||||| ||||| ||||| ||||||  ||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||    
T  3098084 tctaatttaagagaaaaaatataacacataaatataaaaaggttaatgatgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaac 3098182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 28 - 189
Target Start/End: Complemental strand, 34208425 - 34208260
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 126  Q
    |||| |||||||||||||||| ||| |||  ||||||||| ||||||| || |||||||||| ||||||||||||||||||| |||||| |||||||||     
T  34208425 ttcttatttaagaggaaaaatgtaaaataacaacataaaatgttaatggtacttgattatgaaaacttacttgttattggagcgttgtt-gatttgaact 34208327  T
Q  127 tgaagaaaataaggatttggttaatttgagag----tttttggagatttgagatgagaaatgaggaa 189  Q
    |||||||| | ||| ||| | | |||||||||    ||||| ||||||| ||||| |||||||||||    
T  34208326 tgaagaaattgagggttttgatgatttgagagattttttttagagattttagatgtgaaatgaggaa 34208260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 28 - 177
Target Start/End: Complemental strand, 19242436 - 19242284
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 126  Q
    ||||||||||||||||||||| |||||||||||||||||| || |||| || || |||||||  |||||||| |||||| ||||||| | |||||||||     
T  19242436 ttctaatttaagaggaaaaatgtaacatataaacataaaatgtcaatggtacttaattatgaatacttacttattattgcagtgttggttgatttgaact 19242337  T
Q  127 tgaagaaaataaggatttggttaattt--gagagtttttggagatttgagatg 177  Q
    ||||||||   | ||||||| | ||||  |||||||||| ||||||| |||||    
T  19242336 tgaagaaatcgaagatttggatgatttgagagagtttttagagattttagatg 19242284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 33 - 128
Target Start/End: Original strand, 18744543 - 18744640
Alignment:
Q  33 atttaagaggaaaaatttaacatataaacataaaa--gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctg 128  Q
    |||||||||||||||| |||  |||||||||||||  ||| ||| | ||||||||||| |||||||||||||||||||| ||||| ||||||||||||    
T  18744543 atttaagaggaaaaatctaagttataaacataaaaaggttgatgttgtttgattatgaaaacttacttgttattggagttttgtttgatttgaacctg 18744640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 12026717 - 12026634
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaa-agttaatgatatttgattatgataacttacttgttattggagtg 110  Q
    ||||||||||||||||||| | |||||||||||||||||  || |||| || | |||||||  |||||||||||||||| ||||    
T  12026717 ttctaatttaagaggaaaattataacatataaacataaactgtcaatggtaatggattatggaaacttacttgttattgaagtg 12026634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 12033637 - 12033554
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaa-agttaatgatatttgattatgataacttacttgttattggagtg 110  Q
    ||||||||||||||||||| | |||||||||||||||||  || |||| || | |||||||  |||||||||||||||| ||||    
T  12033637 ttctaatttaagaggaaaattataacatataaacataaactgtcaatggtaatggattatggaaacttacttgttattgaagtg 12033554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 101 - 190
Target Start/End: Complemental strand, 4286639 - 4286548
Alignment:
Q  101 tattggagtgttgttggatttgaacctgaagaaaataaggatttggttaatttgagagt--ttttggagatttgagatgagaaatgaggaaa 190  Q
    ||||||||||||||| ||||||||| ||||| || |   ||||||| | |||||||||   |||| ||||||| ||||||||||||||||||    
T  4286639 tattggagtgttgtttgatttgaacttgaaggaatttttgatttggatgatttgagagagatttttgagattttagatgagaaatgaggaaa 4286548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 130
Target Start/End: Original strand, 446093 - 446159
Alignment:
Q  64 aaaagttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctgaa 130  Q
    ||||||||||| | ||||| ||||| ||||||||| |||||| ||| ||||| ||||||||| ||||    
T  446093 aaaagttaatggtgtttgactatgaaaacttacttattattgaagtattgtttgatttgaacttgaa 446159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 124
Target Start/End: Complemental strand, 28050846 - 28050812
Alignment:
Q  90 aacttacttgttattggagtgttgttggatttgaa 124  Q
    |||||||||||||||||||||||||| ||||||||    
T  28050846 aacttacttgttattggagtgttgtttgatttgaa 28050812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 43 - 194
Target Start/End: Complemental strand, 40414220 - 40414066
Alignment:
Q  43 aaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctgaagaaaataagga 141  Q
    |||||| ||||||||||||||||||| |||||| | |||||| |||| |||||||||||||||||||||||||| ||||||||| ||||| || |  |||    
T  40414220 aaaaatataacatataaacataaaaggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaacttgaaggaattttgga 40414121  T
Q  142 tttggttaatttg--agagtttttggagatttgagatgagaaatgaggaaatgag 194  Q
    ||||| | |||||  |||| |||| ||||||| ||||||||||||||||||||||    
T  40414120 tttgggtgatttgaaagagatttttgagattttagatgagaaatgaggaaatgag 40414066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 28 - 131
Target Start/End: Complemental strand, 16575194 - 16575090
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 126  Q
    |||||||||||||| |||||| |||||||||||||| |||| |||||| | ||||||||||| || ||||||||||||||||||||||| |||||||||     
T  16575194 ttctaatttaagagaaaaaatctaacatataaacatgaaaggttaatggtgtttgattatgaaaaattacttgttattggagtgttgtttgatttgaact 16575095  T
Q  127 tgaag 131  Q
    |||||    
T  16575094 tgaag 16575090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 31 - 190
Target Start/End: Original strand, 14998692 - 14998855
Alignment:
Q  31 taatttaagaggaaaaatttaacatataaacataaaa--gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctg 128  Q
    |||||||| ||||||||| ||||||| ||||||||||  ||||||| | ||||||||||| ||||||||||||||||||||||||||  |||| ||| ||    
T  14998692 taatttaacaggaaaaatctaacatacaaacataaaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttttattttaacttg 14998791  T
Q  129 aagaaaataaggatttggttaattt--gagagtttttggagatttgagatgagaaatgaggaaa 190  Q
    ||| || |  | | ||||  |||||  ||||| |||||||||||| ||||| ||||||||||||    
T  14998792 aaggaattttgaagttggacaatttgagagagattttggagattttagatgggaaatgaggaaa 14998855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 29 - 158
Target Start/End: Original strand, 22843916 - 22844046
Alignment:
Q  29 tctaatttaagaggaaaaatttaacatataaacataaaagtt-aatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacct 127  Q
    |||||||||||||||||||| ||||||||||||||||||  | || |  | |||||||||| ||||||||| |||||||||||||| | ||||||||| |    
T  22843916 tctaatttaagaggaaaaatgtaacatataaacataaaatatcaacggcacttgattatgaaaacttacttattattggagtgttggttgatttgaactt 22844015  T
Q  128 gaagaaaataaggatttggttaatttgagag 158  Q
    ||||||| |  |||||||| | |||||||||    
T  22844016 gaagaaattggggatttggatgatttgagag 22844046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 42 - 124
Target Start/End: Complemental strand, 43692628 - 43692545
Alignment:
Q  42 gaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaa 124  Q
    ||||||| ||||||||||||||||||| |||||| | |||||| |||| |||||||||||||||||||||||||| ||||||||    
T  43692628 gaaaaatataacatataaacataaaaggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaa 43692545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 67
Target Start/End: Original strand, 32109527 - 32109566
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaa 67  Q
    |||||||||||||| |||||| ||||||||||||||||||    
T  32109527 ttctaatttaagagaaaaaatgtaacatataaacataaaa 32109566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0489 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0489
Description:

Target: scaffold0489; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 28 - 192
Target Start/End: Complemental strand, 7657 - 7491
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacc 126  Q
    ||||||| ||||||||||||||||||||||||| |||||| ||||||| | | ||||| ||| ||||||||||||| |||||||||||| |||||||||     
T  7657 ttctaatctaagaggaaaaatttaacatataaaaataaaaggttaatggtgtctgattttgaaaacttacttgttactggagtgttgtttgatttgaact 7558  T
Q  127 tgaagaaaataaggatttggttaattt--gagagtttttggagatttgagatgagaaatgaggaaatg 192  Q
    || |  || |  |||||| ||| ||||  ||||| |||||||||||| ||||| |||| |||||||||    
T  7557 tgtaagaattttggatttagttgatttgagagagattttggagattttagatgtgaaa-gaggaaatg 7491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 28 - 124
Target Start/End: Complemental strand, 39422 - 39325
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaagttaa-tgatatttgattatgataacttacttgttattggagtgttgttggatttgaa 124  Q
    |||||||||||||  |||||| ||||||||||| ||||||| ||| |||| ||||||||||| ||||||||||| |||| ||||||||| ||||||||    
T  39422 ttctaatttaagacaaaaaatctaacatataaatataaaaggtaaatgatgtttgattatgaaaacttacttgtgattgaagtgttgtttgatttgaa 39325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 620 - 537
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacat-aaaagttaatgatatttgattatgataacttacttgttattggagtg 110  Q
    ||||||||||||||||||||| |||||||||||||| ||| || |||| || | |||||||| ||||| |||||||||||||||    
T  620 ttctaatttaagaggaaaaatgtaacatataaacatcaaatgtcaatggtaatggattatgaaaactttcttgttattggagtg 537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 31 - 187
Target Start/End: Complemental strand, 4833 - 4680
Alignment:
Q  31 taatttaagaggaaaaatttaacatataaacataaaagttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaacctgaa 130  Q
    ||||||||||| |||||| |||||||| ||    || ||||||| | ||||||||||| |||||||||||||||||||||||||| ||||||||  ||||    
T  4833 taatttaagagaaaaaatctaacatatcaa----aaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgtt-gatttgaagttgaa 4739  T
Q  131 gaaaataaggatttggttaattt--gagagtttttggagatttgagatgagaaatgagg 187  Q
    | || |  |||| ||| | ||||  ||||| |||| ||||||| ||||| |||||||||    
T  4738 ggaattttggatctgggtgatttgagagagatttttgagattttagatgggaaatgagg 4680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 251 - 363
Target Start/End: Complemental strand, 36264 - 36152
Alignment:
Q  251 gcgtgatttaactcacgctgatttaacacatgtgtgacttaactcacactgggaacattttcggaagtttgattggaagtgagtaaaacttgttggaaga 350  Q
    |||||| |||||||||||    ||||||||||  ||| |||||||||||  ||  |||||||| |||||||||||| |||||  |||||||||||  |||    
T  36264 gcgtgacttaactcacgccaggttaacacatgcttgagttaactcacaccagggtcattttcgaaagtttgattgggagtgaacaaaacttgttgagaga 36165  T
Q  351 agagcatttttcg 363  Q
    |||||||||||||    
T  36164 agagcatttttcg 36152  T

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Target: scaffold0591 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 2300 - 2217
Alignment:
Q  28 ttctaatttaagaggaaaaatttaacatataaacataaaa-gttaatgatatttgattatgataacttacttgttattggagtg 110  Q
    ||||||| ||||||||||||| |||||||||||||||||| || ||||||| |  ||||||| ||||||||| || ||||||||    
T  2300 ttctaatataagaggaaaaatgtaacatataaacataaaatgtcaatgataatgaattatgaaaacttacttattgttggagtg 2217  T

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