View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19745_low_2 (Length: 479)
Name: NF19745_low_2
Description: NF19745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19745_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Original strand, 32405653 - 32406111
Alignment:
| Q |
1 |
tcatcattttcaaccttgacatgcccacataattgattggatgtaacataacataagatcttattataatgttattattatgatgaattatacatggaaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32405653 |
tcatcattttcaaccttgacatgcccacataattgattggatgtaacataacataagatcttat---aatgttattattatgatgaattatacatggaaa |
32405749 |
T |
|
| Q |
101 |
aggtccatttgttcactctcaaatacacataacccaaatacaaagaacattcaaagccaaggagaattgtaaatgggagttacaacagatttaacttgca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32405750 |
aggtccatttgttcactctcaaatacacataacccaaatacaaagaacattcaaagccaaggagaattgtaaatgggagttacaacagatttaacttgca |
32405849 |
T |
|
| Q |
201 |
aatacttatgtaatgattccaatccaaaatctcttccaaacccactcatcttgtaacctccataaggaatatcatttccaaaggcaaagtagcaattaat |
300 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32405850 |
aatatttatgtaatgattccaatccaaaatctcttccaaacccactcatcttgtaacctccataaggaatatcatttccaaaggcaaagtagcaattaat |
32405949 |
T |
|
| Q |
301 |
ccaaataattcctgctctaatggaccttgacacagtgtttgctatatccaaattctttgtcacaattcctgctgctaagccatatcttgtattgtttgca |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32405950 |
ccaaataattcctgctctaatggaccttgacacagtgtttgctatatccaaattctttgtcacaattcctgctgctaagccatattttgtattgtttgca |
32406049 |
T |
|
| Q |
401 |
cttttgattgcttcctcaatagtccta-ttttttattcatgtacttgaattcatcattcatg |
461 |
Q |
| |
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| T |
32406050 |
cttttgattgcttcctcaatagtcctatttttttattcatgtacttgaattcatcattcatg |
32406111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 150 - 426
Target Start/End: Complemental strand, 32435823 - 32435547
Alignment:
| Q |
150 |
ttcaaagccaaggagaattgtaaatgggagttacaacagatttaacttgcaaatacttatgtaatgattccaatccaaaatctcttccaaacccactcat |
249 |
Q |
| |
|
|||| ||||| |||||||||||||| |||||| |||||||||||||||| | |||||| || | || |||||||||| ||||||||||| | |||||||| |
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| T |
32435823 |
ttcagagccatggagaattgtaaataggagttgcaacagatttaacttgaagatacttgtgaagtgcttccaatccataatctcttccatatccactcat |
32435724 |
T |
|
| Q |
250 |
cttgtaacctccataaggaatatcatttccaaaggcaaagtagcaattaatccaaataattcctgctctaatggaccttgacacagtgtttgctatatcc |
349 |
Q |
| |
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|| || |||||| |||| |||| | |||||||||| |||||||| |||||||| || ||||| | ||| |||||||| || || ||||| |||||| |
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| T |
32435723 |
tttataccctccaaaagggcaatcaatatcaaaggcaaaatagcaattgatccaaatgatacctgcacgaattgaccttgagactgtatttgcaatatcc |
32435624 |
T |
|
| Q |
350 |
aaattctttgtcacaattcctgctgctaagccatatcttgtattgtttgcacttttgattgcttcctcaatagtcct |
426 |
Q |
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||||||||||||||||| |||||||||| ||||||| | |||||||| || | || ||| |||||||||| ||||| |
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|
| T |
32435623 |
aaattctttgtcacaatccctgctgctaggccatatttggtattgttggctttcttaattccttcctcaatggtcct |
32435547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 155 - 426
Target Start/End: Complemental strand, 43621909 - 43621638
Alignment:
| Q |
155 |
agccaaggagaattgtaaatgggagttacaacagatttaacttgcaaatacttatgtaatgattccaatccaaaatctcttccaaacccactcatcttgt |
254 |
Q |
| |
|
||||| |||||||| ||||||||||| ||||||||||||||||| | |||||| || | | ||| |||||| ||||||||||||| |||||||| || | |
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| T |
43621909 |
agccagggagaattataaatgggagtaacaacagatttaacttgtagatacttgtgaagggcttctaatccataatctcttccaaatccactcattttat |
43621810 |
T |
|
| Q |
255 |
aacctccataaggaatatcatttccaaaggcaaagtagcaattaatccaaataattcctgctctaatggaccttgacacagtgtttgctatatccaaatt |
354 |
Q |
| |
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| |||||| |||||||||||| |||||| ||||| || || || ||||||||| | ||||| | |||||| |||||||| |||||||| ||||||||||| |
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| T |
43621809 |
atcctccaaaaggaatatcatctccaaaagcaaaataacagtttatccaaatagtgcctgcacgaatggatcttgacactgtgtttgcaatatccaaatt |
43621710 |
T |
|
| Q |
355 |
ctttgtcacaattcctgctgctaagccatatcttgtattgtttgcacttttgattgcttcctcaatagtcct |
426 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||| || ||||| || |||||||||||||||||||| |
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|
| T |
43621709 |
ctttgtcacaatacctgctgctagtccatatcttgtattattagcactcttaattgcttcctcaatagtcct |
43621638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 150 - 426
Target Start/End: Complemental strand, 43628366 - 43628090
Alignment:
| Q |
150 |
ttcaaagccaaggagaattgtaaatgggagttacaacagatttaacttgcaaatacttatgtaatgattccaatccaaaatctcttccaaacccactcat |
249 |
Q |
| |
|
|||||||||| |||||||||||||| || ||||||| ||||||||||| || ||||| || | | ||| ||||| |||||||||||| |||||||| |
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| T |
43628366 |
ttcaaagccagggagaattgtaaataggtgttacaatggatttaacttgtaagtacttgtgaagagcttctaatccctgatctcttccaaatccactcat |
43628267 |
T |
|
| Q |
250 |
cttgtaacctccataaggaatatcatttccaaaggcaaagtagcaattaatccaaataattcctgctctaatggaccttgacacagtgtttgctatatcc |
349 |
Q |
| |
|
|| || |||||| ||||||| ||| |||| | ||||| || | || ||||||||||| ||||| | ||||||||||| ||||||||||| |||||| |
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| T |
43628266 |
tttatatcctccaaaaggaatgtcacttcccacggcaagataagagttgatccaaataatgcctgcacggatggaccttgaaacagtgtttgcaatatcc |
43628167 |
T |
|
| Q |
350 |
aaattctttgtcacaattcctgctgctaagccatatcttgtattgtttgcacttttgattgcttcctcaatagtcct |
426 |
Q |
| |
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|| ||||| |||||||| |||||||||| ||||||||| |||||||| ||||| || || ||||||||||||||||| |
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| T |
43628166 |
aagttcttggtcacaatgcctgctgctaggccatatctggtattgttggcactcttaatggcttcctcaatagtcct |
43628090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 7e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 202 - 314
Target Start/End: Complemental strand, 31914592 - 31914480
Alignment:
| Q |
202 |
atacttatgtaatgattccaatccaaaatctcttccaaacccactcatcttgtaacctccataaggaatatcatttccaaaggcaaagtagcaattaatc |
301 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
31914592 |
atacttatgtaatgattcaaatccaaaatctcttccaaacccactcatcttgtaacctccataaggaatgtcatttccaaaggcaaagtagcaattaatc |
31914493 |
T |
|
| Q |
302 |
caaataattcctg |
314 |
Q |
| |
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|||||| |||||| |
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|
| T |
31914492 |
caaatagttcctg |
31914480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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