View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19745_low_4 (Length: 468)
Name: NF19745_low_4
Description: NF19745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19745_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 21 - 453
Target Start/End: Complemental strand, 26598111 - 26597678
Alignment:
| Q |
21 |
aaggcacatccaatcatgttctgagagcaaatcaaaacaatgtgatgaagatcgcatcatgatctctctacaattgtcatcca-gacagttgtcgatcta |
119 |
Q |
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|||||||| |||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
26598111 |
aaggcacacccaaccatgtcttgagagcaaatcaagacaatgtgatgaagatcgcatcatgatctatctacaattgtcatccaagacagttgtcgatcta |
26598012 |
T |
|
| Q |
120 |
ggagtttcgtcctcctatatatgccaacttatgtctcaagtccatctatacagtttgtagacccttaagcctcacgcgcattgacattgtctatcttgtg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
26598011 |
ggagtttcgtcctcctatatatgccaacttatgtctcaggtccatctatatagtttgtagacccttaagcctcacacgcattgacattgtctgtcttgtg |
26597912 |
T |
|
| Q |
220 |
cgttaagagtgtttgcaagtacacattatttttatggaacaaccgccatatttaactacttaattgttcctcaggtccttgatgtaggtcaggtttctat |
319 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
26597911 |
cattaagagtgtttgcaagtacacattatttttatggaacaactgccatatttaactacttaattgttcctcaggtccttgatctaggtcaggtttctat |
26597812 |
T |
|
| Q |
320 |
tcaatcataagattatttaaaacttgaaatcatgaatcactaataaacttgaataagacacatgtaattacattgatgtaattttataaaccaaatatgg |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26597811 |
tcaatcataagattatttaaaacttgaaatcatgaatcactaataaacttgaataagacacatgtaattacattgatataattttataaaccaaatatgg |
26597712 |
T |
|
| Q |
420 |
gtggttaatcttcttctacccttcgaattctctg |
453 |
Q |
| |
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|| ||||||||||||||||||||||||| ||||| |
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|
| T |
26597711 |
gtagttaatcttcttctacccttcgaatcctctg |
26597678 |
T |
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