View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19745_low_7 (Length: 379)
Name: NF19745_low_7
Description: NF19745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19745_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 5605874 - 5606233
Alignment:
| Q |
1 |
ttcccgatgtgtttacttataacacatatttggacaccttgtgtaaggcaggccaaattgatttggctagaagggtattcgaagagatgtcgtcaaagag |
100 |
Q |
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| T |
5605874 |
ttcccgatgtgtttacttataacacatatttggacaccttgtgtaaggcaggccaaattgatttggctagaagggtatttgaagagatgtcgtcgaagag |
5605973 |
T |
|
| Q |
101 |
agtttggccaaatgtggtgacttacagtgcaatgatggatggctatgccaaggccaatctcttggaagacgccctaaacctgtatgaagaaatgaagctc |
200 |
Q |
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| T |
5605974 |
agtttggccaaatgtggtgacttacagtgcaatgatggatggctatgccaaggccaacctcttggaagacgccctaaacctgtatgaagaaatgaagctc |
5606073 |
T |
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| Q |
201 |
cgatctgtttgtcttgatagagtgtcctataacacactcatcggaatctacgagaagctcggcaatcttgatgaagctattgagaagtgcaaagagatgg |
300 |
Q |
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| T |
5606074 |
cgatctgtttgtcttgatagagtgtcctataacacactcgtcggaatctacgagaagctcggcaatcttgatgaagctattgagaagtgcaaagagatgg |
5606173 |
T |
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| Q |
301 |
agagaagcggaatcaatagagatgtagtaacctacaatgctcttttgtccgggtatggca |
360 |
Q |
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| T |
5606174 |
agagaagcggaatcaatagagatgtagtaacctacaatgctcttttgtccgggtatggca |
5606233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 12 - 352
Target Start/End: Complemental strand, 5595027 - 5594687
Alignment:
| Q |
12 |
tttacttataacacatatttggacaccttgtgtaaggcaggccaaattgatttggctagaagggtattcgaagagatgtcgtcaaagagagtttggccaa |
111 |
Q |
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| T |
5595027 |
tttacttataacacttatttggacacattgtgtaagggcggccaaatagatttggctaggagggtcttggaagaaatgtcttccaggagagtttggccaa |
5594928 |
T |
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| Q |
112 |
atgtggtgacttacagtgcaatgatggatggctatgccaaggccaatctcttggaagacgccctaaacctgtatgaagaaatgaagctccgatctgtttg |
211 |
Q |
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| T |
5594927 |
ctgttgtgacttatagcacaatgatagatggttgtgccaaggctaacctcttggaagatgccctaaatttgtacgaagaaatgaagcttcgatctatttc |
5594828 |
T |
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| Q |
212 |
tcttgatagagtgtcctataacacactcatcggaatctacgagaagctcggcaatcttgatgaagctattgagaagtgcaaagagatggagagaagcgga |
311 |
Q |
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| T |
5594827 |
tgttgatagagtgtcctataacacaatggtcggaatctatgcgaagctcggtaggtttgatgaagccattggtcaatgcaaagagatggagagttgtgga |
5594728 |
T |
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| Q |
312 |
atcaatagagatgtagtaacctacaatgctcttttgtccgg |
352 |
Q |
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| T |
5594727 |
atgaaaagagatgttgtaacttataatgcacttttgtccgg |
5594687 |
T |
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