View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19745_low_9 (Length: 222)
Name: NF19745_low_9
Description: NF19745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19745_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 40677209 - 40677022
Alignment:
| Q |
17 |
gaagccaagaaggtaattgagaggtatcaaagttattctttgatagacgaaaacaagaatgtgagccatgaaagatacattatgcagatgattgctaaag |
116 |
Q |
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| T |
40677209 |
gaagccaagaaggtaattgagaggtatcaaagttattctttgatagacgaaaacaagaatgtgagccatgaaagatacattatgcagatgattgctaaag |
40677110 |
T |
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| Q |
117 |
gaagggataaactaaaaaagttgaagcatgacaatcgtgagcaagagctgaatctttctatgctacggaacttgaaaaacaacaattt |
204 |
Q |
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| T |
40677109 |
gaagggataaactaaaaaagttgaagcatgacaatcgtgagcaagagctgaatctttctatgctacggaacttgaaaaacaacaattt |
40677022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 180
Target Start/End: Original strand, 40705499 - 40705660
Alignment:
| Q |
19 |
agccaagaaggtaattgagaggtatcaaagttattctttgatagacgaaaacaagaatgtgagccatgaaagatacattatgcagatgattgctaaagga |
118 |
Q |
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| T |
40705499 |
agccaataagataattgagaggtttcaaaatttatctgtgaaagatgaaactagaaatgtgagccatgaaaggtttatcatgcagacgattgccaaagcc |
40705598 |
T |
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| Q |
119 |
agggataaactaaaaaagttgaagcatgacaatcgtgagcaagagctgaatctttctatgct |
180 |
Q |
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| T |
40705599 |
agggacaaactaagaaagttgaaatatgagaatcatgagcaagagtgggatctttttatgct |
40705660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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