View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19746_high_6 (Length: 228)
Name: NF19746_high_6
Description: NF19746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19746_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 27454394 - 27454171
Alignment:
| Q |
1 |
aatctcgagtgaaatgatcatttagctagactttatttacctttataccaaattataaattactatgacccattcattagatgggtgaatttgtttgacg |
100 |
Q |
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| T |
27454394 |
aatctcgagtgaaatgatcatttagctagactttatttacctttataccaaattataaattactatgacccattcattagatgggtgaattggtttgaag |
27454295 |
T |
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| Q |
101 |
ggacaacataagaattaaaatgttaagaatgttataactgcttttcttattttttgttattttggttaaataatctatggattagaaattcaccattaaa |
200 |
Q |
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| T |
27454294 |
ggacaacataagaattaaaatgttaagaatgttataactgcttctttta-tttttgttattttggttaaatagtctatgaattagaaattcaccattaaa |
27454196 |
T |
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| Q |
201 |
gtgaattagtgatgaattcaaggtt |
225 |
Q |
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|||||| |||||||||||||||||| |
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| T |
27454195 |
gtgaataagtgatgaattcaaggtt |
27454171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 27433070 - 27432863
Alignment:
| Q |
17 |
atcatttagctagactttatttacctttataccaaattataaattactatgacccattcattagatgggtgaatttgtttgacgggacaacataagaatt |
116 |
Q |
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| T |
27433070 |
atcatttagctagactttatttacctttataccaaattataaattactatgacccattcattagatgggtgaattggtttgaagggacaacataagaatt |
27432971 |
T |
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| Q |
117 |
aaaatgttaagaatgttataactgcttttcttattttttgttattttggttaaataatctatggattagaaattcaccattaaagtgaattagtgatgaa |
216 |
Q |
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| T |
27432970 |
aaaatgttaagaatgttataactgcgtttttta-tttttattattttggtcaaatagttcatggattagaaattcatcattaaagtgaataagtgatgaa |
27432872 |
T |
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| Q |
217 |
ttcaaggtt |
225 |
Q |
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||||||||| |
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| T |
27432871 |
ttcaaggtt |
27432863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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