View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19746_low_2 (Length: 367)

Name: NF19746_low_2
Description: NF19746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19746_low_2
NF19746_low_2
[»] chr6 (21 HSPs)
chr6 (1-359)||(6982756-6983114)
chr6 (80-147)||(28138404-28138471)
chr6 (70-131)||(28867799-28867860)
chr6 (82-145)||(10501975-10502038)
chr6 (106-317)||(5764406-5764618)
chr6 (106-317)||(5767941-5768153)
chr6 (106-317)||(5771476-5771688)
chr6 (106-317)||(5775011-5775223)
chr6 (106-317)||(5778546-5778758)
chr6 (106-317)||(5782081-5782293)
chr6 (106-317)||(5785616-5785828)
chr6 (106-317)||(5789151-5789363)
chr6 (106-317)||(5792686-5792898)
chr6 (106-317)||(5796221-5796433)
chr6 (106-317)||(5799756-5799968)
chr6 (106-317)||(5803291-5803503)
chr6 (106-317)||(5806826-5807038)
chr6 (106-317)||(5810361-5810573)
chr6 (106-317)||(5813896-5814108)
chr6 (106-317)||(5817431-5817643)
chr6 (82-137)||(31934726-31934781)
[»] chr5 (5 HSPs)
chr5 (70-223)||(33417422-33417572)
chr5 (86-145)||(31610042-31610101)
chr5 (86-147)||(11888182-11888243)
chr5 (82-145)||(27584699-27584762)
chr5 (89-145)||(18979870-18979926)
[»] chr2 (12 HSPs)
chr2 (86-223)||(21949823-21949960)
chr2 (78-145)||(14555885-14555952)
chr2 (82-145)||(30426133-30426196)
chr2 (82-145)||(32229984-32230047)
chr2 (78-147)||(13698130-13698199)
chr2 (86-145)||(9446973-9447032)
chr2 (86-145)||(31320254-31320313)
chr2 (88-147)||(40275144-40275203)
chr2 (101-147)||(41411524-41411570)
chr2 (79-147)||(38346696-38346764)
chr2 (70-137)||(18559723-18559790)
chr2 (149-193)||(45212799-45212843)
[»] chr7 (8 HSPs)
chr7 (77-193)||(49094501-49094617)
chr7 (70-193)||(38836130-38836252)
chr7 (77-153)||(8308206-8308282)
chr7 (82-145)||(25862613-25862676)
chr7 (89-147)||(8425057-8425115)
chr7 (78-147)||(30559364-30559433)
chr7 (82-145)||(4277323-4277386)
chr7 (82-145)||(32033796-32033859)
[»] chr4 (5 HSPs)
chr4 (76-295)||(2048981-2049198)
chr4 (78-147)||(3958947-3959016)
chr4 (81-145)||(39735815-39735879)
chr4 (82-145)||(16595098-16595161)
chr4 (96-145)||(1558385-1558434)
[»] chr3 (5 HSPs)
chr3 (76-177)||(11536248-11536348)
chr3 (70-193)||(3848243-3848364)
chr3 (78-147)||(3830681-3830750)
chr3 (77-147)||(3792501-3792571)
chr3 (235-317)||(51499698-51499780)
[»] chr8 (6 HSPs)
chr8 (77-153)||(6596514-6596590)
chr8 (70-164)||(40715937-40716030)
chr8 (78-136)||(19168176-19168234)
chr8 (75-185)||(39528379-39528495)
chr8 (88-147)||(26155284-26155343)
chr8 (85-145)||(4922779-4922839)
[»] chr1 (10 HSPs)
chr1 (82-145)||(42080695-42080758)
chr1 (86-137)||(18438600-18438651)
chr1 (86-137)||(18449458-18449509)
chr1 (86-137)||(18454551-18454602)
chr1 (88-147)||(43403896-43403955)
chr1 (78-147)||(52242886-52242959)
chr1 (82-145)||(16140380-16140443)
chr1 (82-145)||(40632849-40632912)
chr1 (83-137)||(9057927-9057981)
chr1 (96-145)||(48769905-48769954)
[»] scaffold0060 (1 HSPs)
scaffold0060 (78-147)||(18921-18989)
[»] scaffold0141 (1 HSPs)
scaffold0141 (83-147)||(16535-16599)
[»] scaffold0267 (1 HSPs)
scaffold0267 (78-147)||(7443-7512)


Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 6982756 - 6983114
Alignment:
Q  1 tactctaacacacatattctaactttaaattgtagagccgtatgtcaagttcacatacaagagttcaggttcacaaaaaagcacaagtagtgagcacata 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  6982756 tactctaacacacatattctaactttaaattgtagagccatatatcaggttcacatacaagagttcaggtttacaaaaaagcataagtagtgagcacata 6982855  T
Q  101 caaattcgttcaaaaaagggtgtaatcaaaagcaatcctaaatatttatgattagaggattaggcaggttcgatactcaaatattatgcataaatactac 200  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  6982856 caaactcgttcaaaaaagggtgtaatcaaaagcaatcttaaatatttgtgattagagaattaggcaggttcgatactcaaacattatgcataaatactac 6982955  T
Q  201 taagtctgtttagaattctttagaggtatgtgtaccctttgcttgtcatggcaggttcctctttgtttcgttgctaaaggatagctttaggcttcaattc 300  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6982956 taagtctatttagaattctttagaggtatgtgtaccctttgcttgtcatggcaggttcctctttgtttcgttgctaaaggatagctttaggcttcaattc 6983055  T
Q  301 tttatgttgtgtaaacatgtttaggtcttaatcttgattcgcaattaatttcctttgct 359  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||    
T  6983056 tttatgttgtgtaaacatgtttaggtcttaatcttggtttgcaattaatttccattgct 6983114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 80 - 147
Target Start/End: Complemental strand, 28138471 - 28138404
Alignment:
Q  80 agcacaagtagtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaatcctaaatattt 147  Q
    |||||||||||| |||||||| ||| |||||| |||||||||||| ||||||| ||||||||||||||    
T  28138471 agcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatattt 28138404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 28867860 - 28867799
Alignment:
Q  70 ttcacaaaaaagcacaagtagtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaa 131  Q
    ||||| ||||||||||||||||||| ||||||||| ||||| |||||||| |||||||||||    
T  28867860 ttcactaaaaagcacaagtagtgagtacatacaaactcgtttaaaaaaggttgtaatcaaaa 28867799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 145
Target Start/End: Complemental strand, 10502038 - 10501975
Alignment:
Q  82 cacaagtagtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaatcctaaatat 145  Q
    |||||||||| ||||||| |||| |||||| |||||||||||||| ||||||||||| ||||||    
T  10502038 cacaagtagtaagcacatccaaactcgttccaaaaagggtgtaataaaaagcaatcccaaatat 10501975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 317
Target Start/End: Complemental strand, 5764618 - 5764406
Alignment:
Q  106 tcgttcaaaaaagggtgtaatcaaaagcaatcctaaatatttatgattagaggattaggcaggttcgatactcaaatattatgcataaatactactaagt 205  Q
    |||||| ||||| ||||| || |||| |||||  |||||||  | |||||||||||||| ||||| |||||| |  |||| |||||||   || ||| ||    
T  5764618 tcgttccaaaaatggtgttataaaaaacaatctcaaatattg-taattagaggattaggaaggtttgatacttatgtattttgcataacatctgctatgt 5764520  T
Q  206 ctgtttagaattctttagaggtatgtgta-ccctttgcttgtcatggcaggttcctctttg-tttcgttgctaaaggatagctttaggcttcaattcttt 303  Q
    ||| |||||||||||||| | ||| |||| |||| || || | |||||||| | ||||||| ||| ||||||| |||||||| || ||||||  |||| |    
T  5764519 ctgattagaattctttagggatatatgtagccctgtgttttttatggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctct 5764420  T
Q  304 atgttgtgtaaaca 317  Q
     | |||||||||||    
T  5764419 ctattgtgtaaaca 5764406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 317
Target Start/End: Complemental strand, 5768153 - 5767941
Alignment:
Q  106 tcgttcaaaaaagggtgtaatcaaaagcaatcctaaatatttatgattagaggattaggcaggttcgatactcaaatattatgcataaatactactaagt 205  Q
    |||||| ||||| ||||| || |||| |||||  |||||||  | |||||||||||||| ||||| |||||| |  |||| |||||||   || ||| ||    
T  5768153 tcgttccaaaaatggtgttataaaaaacaatctcaaatattg-taattagaggattaggaaggtttgatacttatgtattttgcataacatctgctatgt 5768055  T
Q  206 ctgtttagaattctttagaggtatgtgta-ccctttgcttgtcatggcaggttcctctttg-tttcgttgctaaaggatagctttaggcttcaattcttt 303  Q
    ||| |||||||||||||| | ||| |||| |||| || || | |||||||| | ||||||| ||| ||||||| |||||||| || ||||||  |||| |    
T  5768054 ctgattagaattctttagggatatatgtagccctgtgttttttatggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctct 5767955  T
Q  304 atgttgtgtaaaca 317  Q
     | |||||||||||    
T  5767954 ctattgtgtaaaca 5767941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 317
Target Start/End: Complemental strand, 5771688 - 5771476
Alignment:
Q  106 tcgttcaaaaaagggtgtaatcaaaagcaatcctaaatatttatgattagaggattaggcaggttcgatactcaaatattatgcataaatactactaagt 205  Q
    |||||| ||||| ||||| || |||| |||||  |||||||  | |||||||||||||| ||||| |||||| |  |||| |||||||   || ||| ||    
T  5771688 tcgttccaaaaatggtgttataaaaaacaatctcaaatattg-taattagaggattaggaaggtttgatacttatgtattttgcataacatctgctatgt 5771590  T
Q  206 ctgtttagaattctttagaggtatgtgta-ccctttgcttgtcatggcaggttcctctttg-tttcgttgctaaaggatagctttaggcttcaattcttt 303  Q
    ||| |||||||||||||| | ||| |||| |||| || || | |||||||| | ||||||| ||| ||||||| |||||||| || ||||||  |||| |    
T  5771589 ctgattagaattctttagggatatatgtagccctgtgttttttatggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctct 5771490  T
Q  304 atgttgtgtaaaca 317  Q
     | |||||||||||    
T  5771489 ctattgtgtaaaca 5771476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 317
Target Start/End: Complemental strand, 5775223 - 5775011
Alignment:
Q  106 tcgttcaaaaaagggtgtaatcaaaagcaatcctaaatatttatgattagaggattaggcaggttcgatactcaaatattatgcataaatactactaagt 205  Q
    |||||| ||||| ||||| || |||| |||||  |||||||  | |||||||||||||| ||||| |||||| |  |||| |||||||   || ||| ||    
T  5775223 tcgttccaaaaatggtgttataaaaaacaatctcaaatattg-taattagaggattaggaaggtttgatacttatgtattttgcataacatctgctatgt 5775125  T
Q  206 ctgtttagaattctttagaggtatgtgta-ccctttgcttgtcatggcaggttcctctttg-tttcgttgctaaaggatagctttaggcttcaattcttt 303  Q
    ||| |||||||||||||| | ||| |||| |||| || || | |||||||| | ||||||| ||| ||||||| |||||||| || ||||||  |||| |    
T  5775124 ctgattagaattctttagggatatatgtagccctgtgttttttatggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctct 5775025  T
Q  304 atgttgtgtaaaca 317  Q
     | |||||||||||    
T  5775024 ctattgtgtaaaca 5775011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 317
Target Start/End: Complemental strand, 5778758 - 5778546
Alignment:
Q  106 tcgttcaaaaaagggtgtaatcaaaagcaatcctaaatatttatgattagaggattaggcaggttcgatactcaaatattatgcataaatactactaagt 205  Q
    |||||| ||||| ||||| || |||| |||||  |||||||  | |||||||||||||| ||||| |||||| |  |||| |||||||   || ||| ||    
T  5778758 tcgttccaaaaatggtgttataaaaaacaatctcaaatattg-taattagaggattaggaaggtttgatacttatgtattttgcataacatctgctatgt 5778660  T
Q  206 ctgtttagaattctttagaggtatgtgta-ccctttgcttgtcatggcaggttcctctttg-tttcgttgctaaaggatagctttaggcttcaattcttt 303  Q
    ||| |||||||||||||| | ||| |||| |||| || || | |||||||| | ||||||| ||| ||||||| |||||||| || ||||||  |||| |    
T  5778659 ctgattagaattctttagggatatatgtagccctgtgttttttatggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctct 5778560  T
Q  304 atgttgtgtaaaca 317  Q
     | |||||||||||    
T  5778559 ctattgtgtaaaca 5778546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 317
Target Start/End: Complemental strand, 5782293 - 5782081
Alignment:
Q  106 tcgttcaaaaaagggtgtaatcaaaagcaatcctaaatatttatgattagaggattaggcaggttcgatactcaaatattatgcataaatactactaagt 205  Q
    |||||| ||||| ||||| || |||| |||||  |||||||  | |||||||||||||| ||||| |||||| |  |||| |||||||   || ||| ||    
T  5782293 tcgttccaaaaatggtgttataaaaaacaatctcaaatattg-taattagaggattaggaaggtttgatacttatgtattttgcataacatctgctatgt 5782195  T
Q  206 ctgtttagaattctttagaggtatgtgta-ccctttgcttgtcatggcaggttcctctttg-tttcgttgctaaaggatagctttaggcttcaattcttt 303  Q
    ||| |||||||||||||| | ||| |||| |||| || || | |||||||| | ||||||| ||| ||||||| |||||||| || ||||||  |||| |    
T  5782194 ctgattagaattctttagggatatatgtagccctgtgttttttatggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctct 5782095  T
Q  304 atgttgtgtaaaca 317  Q
     | |||||||||||    
T  5782094 ctattgtgtaaaca 5782081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 317
Target Start/End: Complemental strand, 5785828 - 5785616
Alignment:
Q  106 tcgttcaaaaaagggtgtaatcaaaagcaatcctaaatatttatgattagaggattaggcaggttcgatactcaaatattatgcataaatactactaagt 205  Q
    |||||| ||||| ||||| || |||| |||||  |||||||  | |||||||||||||| ||||| |||||| |  |||| |||||||   || ||| ||    
T  5785828 tcgttccaaaaatggtgttataaaaaacaatctcaaatattg-taattagaggattaggaaggtttgatacttatgtattttgcataacatctgctatgt 5785730  T
Q  206 ctgtttagaattctttagaggtatgtgta-ccctttgcttgtcatggcaggttcctctttg-tttcgttgctaaaggatagctttaggcttcaattcttt 303  Q
    ||| |||||||||||||| | ||| |||| |||| || || | |||||||| | ||||||| ||| ||||||| |||||||| || ||||||  |||| |    
T  5785729 ctgattagaattctttagggatatatgtagccctgtgttttttatggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctct 5785630  T
Q  304 atgttgtgtaaaca 317  Q
     | |||||||||||    
T  5785629 ctattgtgtaaaca 5785616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 317
Target Start/End: Complemental strand, 5789363 - 5789151
Alignment:
Q  106 tcgttcaaaaaagggtgtaatcaaaagcaatcctaaatatttatgattagaggattaggcaggttcgatactcaaatattatgcataaatactactaagt 205  Q
    |||||| ||||| ||||| || |||| |||||  |||||||  | |||||||||||||| ||||| |||||| |  |||| |||||||   || ||| ||    
T  5789363 tcgttccaaaaatggtgttataaaaaacaatctcaaatattg-taattagaggattaggaaggtttgatacttatgtattttgcataacatctgctatgt 5789265  T
Q  206 ctgtttagaattctttagaggtatgtgta-ccctttgcttgtcatggcaggttcctctttg-tttcgttgctaaaggatagctttaggcttcaattcttt 303  Q
    ||| |||||||||||||| | ||| |||| |||| || || | |||||||| | ||||||| ||| ||||||| |||||||| || ||||||  |||| |    
T  5789264 ctgattagaattctttagggatatatgtagccctgtgttttttatggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctct 5789165  T
Q  304 atgttgtgtaaaca 317  Q
     | |||||||||||    
T  5789164 ctattgtgtaaaca 5789151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 317
Target Start/End: Complemental strand, 5792898 - 5792686
Alignment:
Q  106 tcgttcaaaaaagggtgtaatcaaaagcaatcctaaatatttatgattagaggattaggcaggttcgatactcaaatattatgcataaatactactaagt 205  Q
    |||||| ||||| ||||| || |||| |||||  |||||||  | |||||||||||||| ||||| |||||| |  |||| |||||||   || ||| ||    
T  5792898 tcgttccaaaaatggtgttataaaaaacaatctcaaatattg-taattagaggattaggaaggtttgatacttatgtattttgcataacatctgctatgt 5792800  T
Q  206 ctgtttagaattctttagaggtatgtgta-ccctttgcttgtcatggcaggttcctctttg-tttcgttgctaaaggatagctttaggcttcaattcttt 303  Q
    ||| |||||||||||||| | ||| |||| |||| || || | |||||||| | ||||||| ||| ||||||| |||||||| || ||||||  |||| |    
T  5792799 ctgattagaattctttagggatatatgtagccctgtgttttttatggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctct 5792700  T
Q  304 atgttgtgtaaaca 317  Q
     | |||||||||||    
T  5792699 ctattgtgtaaaca 5792686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 317
Target Start/End: Complemental strand, 5796433 - 5796221
Alignment:
Q  106 tcgttcaaaaaagggtgtaatcaaaagcaatcctaaatatttatgattagaggattaggcaggttcgatactcaaatattatgcataaatactactaagt 205  Q
    |||||| ||||| ||||| || |||| |||||  |||||||  | |||||||||||||| ||||| |||||| |  |||| |||||||   || ||| ||    
T  5796433 tcgttccaaaaatggtgttataaaaaacaatctcaaatattg-taattagaggattaggaaggtttgatacttatgtattttgcataacatctgctatgt 5796335  T
Q  206 ctgtttagaattctttagaggtatgtgta-ccctttgcttgtcatggcaggttcctctttg-tttcgttgctaaaggatagctttaggcttcaattcttt 303  Q
    ||| |||||||||||||| | ||| |||| |||| || || | |||||||| | ||||||| ||| ||||||| |||||||| || ||||||  |||| |    
T  5796334 ctgattagaattctttagggatatatgtagccctgtgttttttatggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctct 5796235  T
Q  304 atgttgtgtaaaca 317  Q
     | |||||||||||    
T  5796234 ctattgtgtaaaca 5796221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 317
Target Start/End: Complemental strand, 5799968 - 5799756
Alignment:
Q  106 tcgttcaaaaaagggtgtaatcaaaagcaatcctaaatatttatgattagaggattaggcaggttcgatactcaaatattatgcataaatactactaagt 205  Q
    |||||| ||||| ||||| || |||| |||||  |||||||  | |||||||||||||| ||||| |||||| |  |||| |||||||   || ||| ||    
T  5799968 tcgttccaaaaatggtgttataaaaaacaatctcaaatattg-taattagaggattaggaaggtttgatacttatgtattttgcataacatctgctatgt 5799870  T
Q  206 ctgtttagaattctttagaggtatgtgta-ccctttgcttgtcatggcaggttcctctttg-tttcgttgctaaaggatagctttaggcttcaattcttt 303  Q
    ||| |||||||||||||| | ||| |||| |||| || || | |||||||| | ||||||| ||| ||||||| |||||||| || ||||||  |||| |    
T  5799869 ctgattagaattctttagggatatatgtagccctgtgttttttatggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctct 5799770  T
Q  304 atgttgtgtaaaca 317  Q
     | |||||||||||    
T  5799769 ctattgtgtaaaca 5799756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 317
Target Start/End: Complemental strand, 5803503 - 5803291
Alignment:
Q  106 tcgttcaaaaaagggtgtaatcaaaagcaatcctaaatatttatgattagaggattaggcaggttcgatactcaaatattatgcataaatactactaagt 205  Q
    |||||| ||||| ||||| || |||| |||||  |||||||  | |||||||||||||| ||||| |||||| |  |||| |||||||   || ||| ||    
T  5803503 tcgttccaaaaatggtgttataaaaaacaatctcaaatattg-taattagaggattaggaaggtttgatacttatgtattttgcataacatctgctatgt 5803405  T
Q  206 ctgtttagaattctttagaggtatgtgta-ccctttgcttgtcatggcaggttcctctttg-tttcgttgctaaaggatagctttaggcttcaattcttt 303  Q
    ||| |||||||||||||| | ||| |||| |||| || || | |||||||| | ||||||| ||| ||||||| |||||||| || ||||||  |||| |    
T  5803404 ctgattagaattctttagggatatatgtagccctgtgttttttatggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctct 5803305  T
Q  304 atgttgtgtaaaca 317  Q
     | |||||||||||    
T  5803304 ctattgtgtaaaca 5803291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 317
Target Start/End: Complemental strand, 5807038 - 5806826
Alignment:
Q  106 tcgttcaaaaaagggtgtaatcaaaagcaatcctaaatatttatgattagaggattaggcaggttcgatactcaaatattatgcataaatactactaagt 205  Q
    |||||| ||||| ||||| || |||| |||||  |||||||  | |||||||||||||| ||||| |||||| |  |||| |||||||   || ||| ||    
T  5807038 tcgttccaaaaatggtgttataaaaaacaatctcaaatattg-taattagaggattaggaaggtttgatacttatgtattttgcataacatctgctatgt 5806940  T
Q  206 ctgtttagaattctttagaggtatgtgta-ccctttgcttgtcatggcaggttcctctttg-tttcgttgctaaaggatagctttaggcttcaattcttt 303  Q
    ||| |||||||||||||| | ||| |||| |||| || || | |||||||| | ||||||| ||| ||||||| |||||||| || ||||||  |||| |    
T  5806939 ctgattagaattctttagggatatatgtagccctgtgttttttatggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctct 5806840  T
Q  304 atgttgtgtaaaca 317  Q
     | |||||||||||    
T  5806839 ctattgtgtaaaca 5806826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 317
Target Start/End: Complemental strand, 5810573 - 5810361
Alignment:
Q  106 tcgttcaaaaaagggtgtaatcaaaagcaatcctaaatatttatgattagaggattaggcaggttcgatactcaaatattatgcataaatactactaagt 205  Q
    |||||| ||||| ||||| || |||| |||||  |||||||  | |||||||||||||| ||||| |||||| |  |||| |||||||   || ||| ||    
T  5810573 tcgttccaaaaatggtgttataaaaaacaatctcaaatattg-taattagaggattaggaaggtttgatacttatgtattttgcataacatctgctatgt 5810475  T
Q  206 ctgtttagaattctttagaggtatgtgta-ccctttgcttgtcatggcaggttcctctttg-tttcgttgctaaaggatagctttaggcttcaattcttt 303  Q
    ||| |||||||||||||| | ||| |||| |||| || || | |||||||| | ||||||| ||| ||||||| |||||||| || ||||||  |||| |    
T  5810474 ctgattagaattctttagggatatatgtagccctgtgttttttatggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctct 5810375  T
Q  304 atgttgtgtaaaca 317  Q
     | |||||||||||    
T  5810374 ctattgtgtaaaca 5810361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 317
Target Start/End: Complemental strand, 5814108 - 5813896
Alignment:
Q  106 tcgttcaaaaaagggtgtaatcaaaagcaatcctaaatatttatgattagaggattaggcaggttcgatactcaaatattatgcataaatactactaagt 205  Q
    |||||| ||||| ||||| || |||| |||||  |||||||  | |||||||||||||| ||||| |||||| |  |||| |||||||   || ||| ||    
T  5814108 tcgttccaaaaatggtgttataaaaaacaatctcaaatattg-taattagaggattaggaaggtttgatacttatgtattttgcataacatctgctatgt 5814010  T
Q  206 ctgtttagaattctttagaggtatgtgta-ccctttgcttgtcatggcaggttcctctttg-tttcgttgctaaaggatagctttaggcttcaattcttt 303  Q
    ||| |||||||||||||| | ||| |||| |||| || || | |||||||| | ||||||| ||| ||||||| |||||||| || ||||||  |||| |    
T  5814009 ctgattagaattctttagggatatatgtagccctgtgttttttatggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctct 5813910  T
Q  304 atgttgtgtaaaca 317  Q
     | |||||||||||    
T  5813909 ctattgtgtaaaca 5813896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 317
Target Start/End: Complemental strand, 5817643 - 5817431
Alignment:
Q  106 tcgttcaaaaaagggtgtaatcaaaagcaatcctaaatatttatgattagaggattaggcaggttcgatactcaaatattatgcataaatactactaagt 205  Q
    |||||| ||||| ||||| || |||| |||||  |||||||  | |||||||||||||| ||||| |||||| |  |||| |||||||   || ||| ||    
T  5817643 tcgttccaaaaatggtgttataaaaaacaatctcaaatattg-taattagaggattaggaaggtttgatacttatgtattttgcataacatctgctatgt 5817545  T
Q  206 ctgtttagaattctttagaggtatgtgta-ccctttgcttgtcatggcaggttcctctttg-tttcgttgctaaaggatagctttaggcttcaattcttt 303  Q
    ||| |||||||||||||| | ||| |||| |||| || || | |||||||| | ||||||| ||| ||||||| |||||||| || ||||||  |||| |    
T  5817544 ctgattagaattctttagggatatatgtagccctgtgttttttatggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctct 5817445  T
Q  304 atgttgtgtaaaca 317  Q
     | |||||||||||    
T  5817444 ctattgtgtaaaca 5817431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 137
Target Start/End: Original strand, 31934726 - 31934781
Alignment:
Q  82 cacaagtagtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaatc 137  Q
    ||||||||||||| |||| |||| ||| || |||||||||||||| ||||||||||    
T  31934726 cacaagtagtgagaacatccaaactcgatctaaaaagggtgtaattaaaagcaatc 31934781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 8e-40; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 70 - 223
Target Start/End: Original strand, 33417422 - 33417572
Alignment:
Q  70 ttcacaaaaaagcacaagtagtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaatcctaaatatttatgattagaggattaggcaggt 169  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||  |||    
T  33417422 ttcaccaaaaagcacaagtagtgagcacatacaaattcgttctaaaaagggtgtaatcaaaagtaatcctaaatatttgtgattagaggattaggatggt 33417521  T
Q  170 tcgatactcaaatattatgcataaatactactaagtctgtttagaattctttag 223  Q
    | |||||||| || || |||||||   ||  || ||||| ||||||||||||||    
T  33417522 ttgatactcatattttttgcataa---ctgttatgtctgattagaattctttag 33417572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 145
Target Start/End: Original strand, 31610042 - 31610101
Alignment:
Q  86 agtagtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaatcctaaatat 145  Q
    |||||||||||||||||||  ||||| ||||||||||| |||||||||||||| ||||||    
T  31610042 agtagtgagcacatacaaacgcgttctaaaaagggtgtgatcaaaagcaatcccaaatat 31610101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 147
Target Start/End: Complemental strand, 11888243 - 11888182
Alignment:
Q  86 agtagtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaatcctaaatattt 147  Q
    ||||||||||| |||||||||||||| || |||||||| |||||||||||||  ||||||||    
T  11888243 agtagtgagcatatacaaattcgttccaagaagggtgtgatcaaaagcaatctaaaatattt 11888182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 145
Target Start/End: Original strand, 27584699 - 27584762
Alignment:
Q  82 cacaagtagtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaatcctaaatat 145  Q
    |||||||||||||||||| |||| |||||| ||||||||||| || |||  |||||||||||||    
T  27584699 cacaagtagtgagcacatccaaactcgttccaaaaagggtgttataaaacacaatcctaaatat 27584762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 18979870 - 18979926
Alignment:
Q  89 agtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaatcctaaatat 145  Q
    ||||| |||||||||| |||||| ||||||||||| ||||||| |||||| ||||||    
T  18979870 agtgatcacatacaaactcgttctaaaaagggtgtcatcaaaaccaatcccaaatat 18979926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 86 - 223
Target Start/End: Complemental strand, 21949960 - 21949823
Alignment:
Q  86 agtagtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaatcctaaatatttatgattagaggattaggcaggttcgatactcaaatatt 185  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| || || |||| |||||||||    
T  21949960 agtagtgagcacatacaaactcgttctaaaaagggtgtaatcaaaagcaatcccaaatatttgtgattagaggattaggaagatttgatattcaaatatt 21949861  T
Q  186 atgcataaatactactaagtctgtttagaattctttag 223  Q
     | || || | |||||| ||||| ||||||||||||||    
T  21949860 ctacaaaactgctactatgtctgattagaattctttag 21949823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 145
Target Start/End: Original strand, 14555885 - 14555952
Alignment:
Q  78 aaagcacaagtagtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaatcctaaatat 145  Q
    |||||||||| ||||| || ||||||| |||||| ||||||||||| |||||||||||||| ||||||    
T  14555885 aaagcacaagcagtgatcatatacaaactcgttccaaaaagggtgtgatcaaaagcaatcccaaatat 14555952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 145
Target Start/End: Complemental strand, 30426196 - 30426133
Alignment:
Q  82 cacaagtagtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaatcctaaatat 145  Q
    |||||||||||||||||| |||| |||||| |||||||||||||| |||| |||||| ||||||    
T  30426196 cacaagtagtgagcacatccaaactcgttccaaaaagggtgtaataaaaaacaatccaaaatat 30426133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 145
Target Start/End: Complemental strand, 32230047 - 32229984
Alignment:
Q  82 cacaagtagtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaatcctaaatat 145  Q
    |||||||||||||||||| |||| |||||| |||||||||||||| |||| |||||| ||||||    
T  32230047 cacaagtagtgagcacatccaaactcgttccaaaaagggtgtaataaaaaacaatccaaaatat 32229984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 147
Target Start/End: Original strand, 13698130 - 13698199
Alignment:
Q  78 aaagcacaagtagtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaatcctaaatattt 147  Q
    |||||||||||||||||||||| |||| | |||| |  |||||||| |||||||||||||| ||||||||    
T  13698130 aaagcacaagtagtgagcacattcaaactggttccatgaagggtgtgatcaaaagcaatccaaaatattt 13698199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 145
Target Start/End: Original strand, 9446973 - 9447032
Alignment:
Q  86 agtagtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaatcctaaatat 145  Q
    ||||||||||||| |||||  ||||| ||||||||||| |||||||||||||| ||||||    
T  9446973 agtagtgagcacacacaaacgcgttccaaaaagggtgtgatcaaaagcaatcccaaatat 9447032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 145
Target Start/End: Original strand, 31320254 - 31320313
Alignment:
Q  86 agtagtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaatcctaaatat 145  Q
    |||||||||| ||||||||  ||||| ||||||||||| |||||||||||||| ||||||    
T  31320254 agtagtgagctcatacaaacgcgttccaaaaagggtgtgatcaaaagcaatcccaaatat 31320313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 147
Target Start/End: Original strand, 40275144 - 40275203
Alignment:
Q  88 tagtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaatcctaaatattt 147  Q
    |||||| || ||||||| |||||| ||||||||||| |||||||||||||| ||||||||    
T  40275144 tagtgaacaaatacaaactcgttctaaaaagggtgtcatcaaaagcaatcccaaatattt 40275203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 147
Target Start/End: Complemental strand, 41411570 - 41411524
Alignment:
Q  101 caaattcgttcaaaaaagggtgtaatcaaaagcaatcctaaatattt 147  Q
    |||| |||||| |||||||||||||||||||||||||| ||||||||    
T  41411570 caaactcgttccaaaaagggtgtaatcaaaagcaatcccaaatattt 41411524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 147
Target Start/End: Complemental strand, 38346764 - 38346696
Alignment:
Q  79 aagcacaagtagtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaatcctaaatattt 147  Q
    |||||||||||||||||| ||||| | ||||||| |||||| |||  | |||| |||||||||||||||    
T  38346764 aagcacaagtagtgagcagatacatactcgttcacaaaaggatgtggtaaaaaacaatcctaaatattt 38346696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 70 - 137
Target Start/End: Complemental strand, 18559790 - 18559723
Alignment:
Q  70 ttcacaaaaaagcacaagtagtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaatc 137  Q
    ||||| |||||| | |||||  ||||| ||||||| |||||| |||||||| ||||||||||||||||    
T  18559790 ttcaccaaaaagtataagtaacgagcagatacaaactcgttctaaaaagggcgtaatcaaaagcaatc 18559723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 193
Target Start/End: Original strand, 45212799 - 45212843
Alignment:
Q  149 tgattagaggattaggcaggttcgatactcaaatattatgcataa 193  Q
    |||||||||||||||| ||||| |||||||| ||||| |||||||    
T  45212799 tgattagaggattaggaaggtttgatactcatatattttgcataa 45212843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 7e-31; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 77 - 193
Target Start/End: Complemental strand, 49094617 - 49094501
Alignment:
Q  77 aaaagcacaagtagtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaatcctaaatatttatgattagaggattaggcaggttcgatac 176  Q
    ||||||||||||||||||||||||||||  ||||| ||||| ||||| |||||||||||||| |||||||| |||||||||||||||| ||||| | |||    
T  49094617 aaaagcacaagtagtgagcacatacaaacacgttccaaaaaaggtgttatcaaaagcaatcccaaatatttgtgattagaggattaggaaggtttggtac 49094518  T
Q  177 tcaaatattatgcataa 193  Q
    ||| ||||| |||||||    
T  49094517 tcatatattttgcataa 49094501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 70 - 193
Target Start/End: Original strand, 38836130 - 38836252
Alignment:
Q  70 ttcacaaaaaagcacaagtagtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaatcctaaatatttatgattagaggattaggcaggt 169  Q
    ||||| ||||||||||||||||||||| ||||||| |||||| ||||| ||||| |||||||||||||| ||||| || |||||||||||||||| || |    
T  38836130 ttcaccaaaaagcacaagtagtgagcatatacaaactcgttccaaaaatggtgttatcaaaagcaatcccaaata-ttgtgattagaggattaggaagat 38836228  T
Q  170 tcgatactcaaatattatgcataa 193  Q
    | ||||||||  |||| |||||||    
T  38836229 ttgatactcatgtattttgcataa 38836252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 77 - 153
Target Start/End: Complemental strand, 8308282 - 8308206
Alignment:
Q  77 aaaagcacaagtagtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaatcctaaatatttatgatt 153  Q
    ||||| |||||||||||||||||||||| |||||| ||||||  |||||||||||| ||||| |||||||| |||||    
T  8308282 aaaagtacaagtagtgagcacatacaaactcgttctaaaaagaatgtaatcaaaagtaatcccaaatatttgtgatt 8308206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 82 - 145
Target Start/End: Complemental strand, 25862676 - 25862613
Alignment:
Q  82 cacaagtagtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaatcctaaatat 145  Q
    |||||||||||||||||| |||| ||| || |||||||||||||| ||||||||||||||||||    
T  25862676 cacaagtagtgagcacatccaaactcgatccaaaaagggtgtaattaaaagcaatcctaaatat 25862613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 89 - 147
Target Start/End: Original strand, 8425057 - 8425115
Alignment:
Q  89 agtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaatcctaaatattt 147  Q
    |||||||||||||||| |||||| || |||||||| |||||||||||||| ||||||||    
T  8425057 agtgagcacatacaaactcgttccaagaagggtgtgatcaaaagcaatccaaaatattt 8425115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 147
Target Start/End: Complemental strand, 30559433 - 30559364
Alignment:
Q  78 aaagcacaagtagtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaatcctaaatattt 147  Q
    ||||||||||| ||||||||||| ||| | |||| ||||||||||| |||||||||||||| ||| ||||    
T  30559433 aaagcacaagtcgtgagcacatagaaacttgttccaaaaagggtgttatcaaaagcaatcccaaagattt 30559364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 145
Target Start/End: Original strand, 4277323 - 4277386
Alignment:
Q  82 cacaagtagtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaatcctaaatat 145  Q
    |||||||||||||||||| |||| ||  || ||||||||||| || ||||||||||| ||||||    
T  4277323 cacaagtagtgagcacatccaaaatcaatccaaaaagggtgtcattaaaagcaatcccaaatat 4277386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 145
Target Start/End: Original strand, 32033796 - 32033859
Alignment:
Q  82 cacaagtagtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaatcctaaatat 145  Q
    ||||||||||||||| || |||| |||||| ||||||||||| || |||  |||||||||||||    
T  32033796 cacaagtagtgagcatatccaaactcgttccaaaaagggtgttataaaacacaatcctaaatat 32033859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 7e-31; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 76 - 295
Target Start/End: Original strand, 2048981 - 2049198
Alignment:
Q  76 aaaaagcacaagtagtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaatcctaaatatttatgattagaggattaggcaggttcgata 175  Q
    ||||||||||||||||||||| ||||||| |||||| ||||||||||| |||||||||||||| ||||| || |||||||||||||||| ||||| ||||    
T  2048981 aaaaagcacaagtagtgagcatatacaaactcgttccaaaaagggtgttatcaaaagcaatcccaaata-ttgtgattagaggattaggaaggtttgata 2049079  T
Q  176 ctcaaatattatgcataaatactactaagtctgtttag--aattctttagaggtatgtgtaccctttgcttgtcatggcaggttcctctttgtttcgttg 273  Q
    ||||  |||| |||||||   || ||| ||||| ||||  |||||||||| ||||| |||| || ||  || |||||||||| | |||   |||| ||||    
T  2049080 ctcatgtattttgcataacatctgctatgtctgattagaaaattctttaggggtatatgtagcccttcgttttcatggcaggctactc---gttttgttg 2049176  T
Q  274 ctaaaggatagctttaggcttc 295  Q
    ||| |||||||| || ||||||    
T  2049177 ctataggatagcctttggcttc 2049198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 147
Target Start/End: Complemental strand, 3959016 - 3958947
Alignment:
Q  78 aaagcacaagtagtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaatcctaaatattt 147  Q
    ||||||||| ||||||||||||||||| |||||| ||||||||||| |||||||||||||| ||||||||    
T  3959016 aaagcacaaatagtgagcacatacaaactcgttctaaaaagggtgtcatcaaaagcaatcccaaatattt 3958947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 81 - 145
Target Start/End: Original strand, 39735815 - 39735879
Alignment:
Q  81 gcacaagtagtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaatcctaaatat 145  Q
    |||||||||||||||||||||||| |||||| || ||||||||||||||||||||||| ||||||    
T  39735815 gcacaagtagtgagcacatacaaactcgttccaagaagggtgtaatcaaaagcaatccaaaatat 39735879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 145
Target Start/End: Complemental strand, 16595161 - 16595098
Alignment:
Q  82 cacaagtagtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaatcctaaatat 145  Q
    ||||||||||||| |||| |||| |||||  ||||||||||| || ||||||||||| ||||||    
T  16595161 cacaagtagtgagtacatccaaactcgtttcaaaaagggtgttataaaaagcaatcccaaatat 16595098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 1558434 - 1558385
Alignment:
Q  96 acatacaaattcgttcaaaaaagggtgtaatcaaaagcaatcctaaatat 145  Q
    ||||||||| |||||| ||||||||||| ||||||| |||||| ||||||    
T  1558434 acatacaaactcgttctaaaaagggtgtcatcaaaaccaatcccaaatat 1558385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 76 - 177
Target Start/End: Original strand, 11536248 - 11536348
Alignment:
Q  76 aaaaagcacaagtagtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaatcctaaatatttatgattagaggattaggcaggttcgata 175  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||| |||||  ||||| || ||||||||||||||| |||||| ||||    
T  11536248 aaaaagcacaagtagtgagcacatacaaactcgtttaaaaaagggtgtaataaaaaacaatcacaaata-ttgtgattagaggattagacaggtttgata 11536346  T
Q  176 ct 177  Q
    ||    
T  11536347 ct 11536348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 193
Target Start/End: Complemental strand, 3848364 - 3848243
Alignment:
Q  70 ttcacaaaaaagcacaagtagtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaatcctaaatatttatgattagaggattaggcaggt 169  Q
    ||||| ||||| || |||||||||| | ||||||| |||||  ||||||||||  |  |||| |||||||||||||||||||||||| ||||||| | ||    
T  3848364 ttcaccaaaaaacataagtagtgagaaaatacaaactcgtttcaaaaagggtggta--aaaaacaatcctaaatatttatgattagatgattaggaaagt 3848267  T
Q  170 tcgatactcaaatattatgcataa 193  Q
    | |||||||| ||||| |||||||    
T  3848266 ttgatactcatatattctgcataa 3848243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 147
Target Start/End: Complemental strand, 3830750 - 3830681
Alignment:
Q  78 aaagcacaagtagtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaatcctaaatattt 147  Q
    |||||||||||||||||||||| |||| |||||| |  ||| |||| |||||||||||||| ||||||||    
T  3830750 aaagcacaagtagtgagcacattcaaactcgttccatgaagagtgtgatcaaaagcaatccaaaatattt 3830681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 147
Target Start/End: Complemental strand, 3792571 - 3792501
Alignment:
Q  77 aaaagcacaagtagtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaatcctaaatattt 147  Q
    ||||||| ||||||||||||||| |||| |||||| |  || ||||| |||||||||||||| ||||||||    
T  3792571 aaaagcataagtagtgagcacattcaaactcgttccatgaaaggtgtgatcaaaagcaatccaaaatattt 3792501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 317
Target Start/End: Complemental strand, 51499780 - 51499698
Alignment:
Q  235 ccctttgcttgtcatggcaggttcctctttgtttc-gttgctaaaggatagctttaggcttcaattctttatgttgtgtaaaca 317  Q
    |||||||||| | |||||||| ||||||||||||  |||| ||||||||||| |||||||||  |||||| | |||||||||||    
T  51499780 ccctttgctttt-atggcaggctcctctttgtttttgttgataaaggatagccttaggcttcctttctttcttttgtgtaaaca 51499698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 153
Target Start/End: Original strand, 6596514 - 6596590
Alignment:
Q  77 aaaagcacaagtagtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaatcctaaatatttatgatt 153  Q
    ||||||| ||||||||||||||| |||| || ||| ||||||||||||||||||||||||||||||||||| |||||    
T  6596514 aaaagcataagtagtgagcacatccaaactcattctaaaaagggtgtaatcaaaagcaatcctaaatatttgtgatt 6596590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 70 - 164
Target Start/End: Original strand, 40715937 - 40716030
Alignment:
Q  70 ttcacaaaaaagcacaagtagtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaatcctaaatatttatgattagaggattagg 164  Q
    ||||| ||||| ||||||||||||||||||||||| |||||  ||||| | ||  |||||||||||||||||||| || ||||||||||||||||    
T  40715937 ttcaccaaaaaacacaagtagtgagcacatacaaactcgtttcaaaaaagatgctatcaaaagcaatcctaaata-ttgtgattagaggattagg 40716030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 19168176 - 19168234
Alignment:
Q  78 aaagcacaagtagtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaat 136  Q
    ||||||||| || |||||||||||||| |||||| ||||||||||| ||||||||||||    
T  19168176 aaagcacaattattgagcacatacaaactcgttctaaaaagggtgtcatcaaaagcaat 19168234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 185
Target Start/End: Original strand, 39528379 - 39528495
Alignment:
Q  75 aaaaaagcacaagtagtgagcacatacaaattc------gttcaaaaaagggtgtaatcaaaagcaatcctaaatatttatgattagaggattaggcagg 168  Q
    ||||||||||||||||| ||||||||||| | |      |||| |||||||| ||| ||| |||||| |  |||||||| |||||||||||||||| |||    
T  39528379 aaaaaagcacaagtagtaagcacatacaattgcaaacttgttccaaaaagggcgtagtcagaagcaacctcaaatatttgtgattagaggattaggaagg 39528478  T
Q  169 ttcgatactcaaatatt 185  Q
    || ||||||| ||||||    
T  39528479 tttgatactctaatatt 39528495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 88 - 147
Target Start/End: Original strand, 26155284 - 26155343
Alignment:
Q  88 tagtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaatcctaaatattt 147  Q
    |||||| |||||||||| |||||| |||||| | || |||||||||||||| ||||||||    
T  26155284 tagtgaacacatacaaactcgttctaaaaagtgcgtcatcaaaagcaatcccaaatattt 26155343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 145
Target Start/End: Original strand, 4922779 - 4922839
Alignment:
Q  85 aagtagtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaatcctaaatat 145  Q
    ||||||||||||||| |||| |||||| ||||||||| | || ||||||| ||| ||||||    
T  4922779 aagtagtgagcacattcaaactcgttccaaaaagggtctcataaaaagcattcccaaatat 4922839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 145
Target Start/End: Complemental strand, 42080758 - 42080695
Alignment:
Q  82 cacaagtagtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaatcctaaatat 145  Q
    |||||||||||||||||| |||| |||||| |||||||||||||||||||||||||| ||||||    
T  42080758 cacaagtagtgagcacatccaaactcgttccaaaaagggtgtaatcaaaagcaatcccaaatat 42080695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 18438600 - 18438651
Alignment:
Q  86 agtagtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaatc 137  Q
    |||||||||||||||||||  ||||| ||||||||||| |||||||||||||    
T  18438600 agtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 18438651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 18449458 - 18449509
Alignment:
Q  86 agtagtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaatc 137  Q
    |||||||||||||||||||  ||||| ||||||||||| |||||||||||||    
T  18449458 agtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 18449509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 18454551 - 18454602
Alignment:
Q  86 agtagtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaatc 137  Q
    |||||||||||||||||||  ||||| ||||||||||| |||||||||||||    
T  18454551 agtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 18454602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 147
Target Start/End: Complemental strand, 43403955 - 43403896
Alignment:
Q  88 tagtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaatcctaaatattt 147  Q
    |||||| || ||||||| |||||| ||||||||||| |||||||||||||| ||||||||    
T  43403955 tagtgaacaaatacaaactcgttctaaaaagggtgtcatcaaaagcaatcccaaatattt 43403896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 147
Target Start/End: Complemental strand, 52242959 - 52242886
Alignment:
Q  78 aaagcacaagtagtgagcacata----caaattcgttcaaaaaagggtgtaatcaaaagcaatcctaaatattt 147  Q
    |||| ||||||||||||||||||    |||| |||||| || |||||||| |||||||||||||| ||||||||    
T  52242959 aaagtacaagtagtgagcacatatatacaaactcgttccaagaagggtgtgatcaaaagcaatccaaaatattt 52242886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 145
Target Start/End: Complemental strand, 16140443 - 16140380
Alignment:
Q  82 cacaagtagtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaatcctaaatat 145  Q
    ||||||||||||||| || |||| ||||   ||||||| ||||||||||||||| |||||||||    
T  16140443 cacaagtagtgagcaaatccaaactcgtcttaaaaaggatgtaatcaaaagcaaccctaaatat 16140380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 145
Target Start/End: Original strand, 40632849 - 40632912
Alignment:
Q  82 cacaagtagtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaatcctaaatat 145  Q
    |||| |||||||||| || |||| || ||| |||||||| ||||||||||||||||| ||||||    
T  40632849 cacaggtagtgagcatatccaaactcattctaaaaagggcgtaatcaaaagcaatcccaaatat 40632912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 137
Target Start/End: Original strand, 9057927 - 9057981
Alignment:
Q  83 acaagtagtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaatc 137  Q
    ||||||||||||||||| |||| | ||   |||||||||||||||||||||||||    
T  9057927 acaagtagtgagcacatccaaacttgtctcaaaaagggtgtaatcaaaagcaatc 9057981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 48769905 - 48769954
Alignment:
Q  96 acatacaaattcgttcaaaaaagggtgtaatcaaaagcaatcctaaatat 145  Q
    ||||||||||||||||  |||||||||| ||||||| |||||| ||||||    
T  48769905 acatacaaattcgttctgaaaagggtgtcatcaaaaccaatcccaaatat 48769954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 147
Target Start/End: Original strand, 18921 - 18989
Alignment:
Q  78 aaagcacaagtagtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaatcctaaatattt 147  Q
    ||||||||| || |||||||||||||| |||||| |||| |||||| |||||||||||||| ||||||||    
T  18921 aaagcacaattattgagcacatacaaactcgttctaaaa-gggtgtcatcaaaagcaatcccaaatattt 18989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 16599 - 16535
Alignment:
Q  83 acaagtagtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaatcctaaatattt 147  Q
    ||||| |||||||||||| ||| |||||| || |||||||| |||||||||||||| ||||||||    
T  16599 acaaggagtgagcacatataaactcgttccaagaagggtgtgatcaaaagcaatccaaaatattt 16535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 147
Target Start/End: Complemental strand, 7512 - 7443
Alignment:
Q  78 aaagcacaagtagtgagcacatacaaattcgttcaaaaaagggtgtaatcaaaagcaatcctaaatattt 147  Q
    |||||||||||||| || |||| |||| |||||| |  ||| |||| |||||||||||||| ||||||||    
T  7512 aaagcacaagtagtaagtacattcaaactcgttccatgaagagtgtgatcaaaagcaatccaaaatattt 7443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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