View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19746_low_5 (Length: 229)
Name: NF19746_low_5
Description: NF19746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19746_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 27453909 - 27453732
Alignment:
| Q |
17 |
atgaaatacctcaaagtttgaagagtacctacaaaatatttacattcatcttaacactatggatggaagctcgaatata---tttacatttttcttaaca |
113 |
Q |
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| T |
27453909 |
atgaaatacttcagagtttaaagagtacctacaaaatatttacattcatcttagcactatggatggaagctcgaatatgatgtttagattcttcttagca |
27453810 |
T |
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| Q |
114 |
ctaatgatgctcgaacttgaatccttggatatttaagatctatccttttaccatcaaacaatggtgattaacatttga |
191 |
Q |
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| T |
27453809 |
ctaatgatgctcgaacctaaatccttggatatttaagatctatccttttaccatcaaacaatggtgattaacatttga |
27453732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 27432743 - 27432703
Alignment:
| Q |
17 |
atgaaatacctcaaagtttgaagagtacctacaaaatattt |
57 |
Q |
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| T |
27432743 |
atgaaatacctcagagtttaaagagtacctacaaaatattt |
27432703 |
T |
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