View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19747_high_2 (Length: 524)
Name: NF19747_high_2
Description: NF19747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19747_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 295 - 511
Target Start/End: Complemental strand, 38146846 - 38146629
Alignment:
| Q |
295 |
gcgcctagctctcagtttttatactgaaatttataatatctcatctgacaaaagtttggttggtgtcaagtctgattgcacattaattattcaagtctca |
394 |
Q |
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| T |
38146846 |
gcgcctagctctcagtttttatactgaaatttataatatctcatctgacaaaagtttggttggtgtcaagtctgattgcacattaattattcaagtctca |
38146747 |
T |
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| Q |
395 |
agattcaccaatagaaaaatacttgtatttcagtcattttggcacactgacacaataaaatacactctctacagcttgtacgat-acagtcatttggcac |
493 |
Q |
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| T |
38146746 |
agattcactaatagaaaaatacttgtatttcagtcattttggcacactgacacaataaaatacactctctacagcttgtacgatcacagtcatttggcac |
38146647 |
T |
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| Q |
494 |
actgagagattaaaaaat |
511 |
Q |
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| T |
38146646 |
attgagagagtaaaaaat |
38146629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 38147127 - 38146911
Alignment:
| Q |
19 |
tagtgaaggtaacgtatataatatgataaagaaagagattgttgagcatttatgtggtatatagttaaggaaaaagaaaaga-----tacctgagggaat |
113 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
38147127 |
tagtgaaggtaacgtatataacatgataaagaaagagattgttgagcatttatgtggtatatagttaaggaaaaagaaaagaaaagatacctgagggaat |
38147028 |
T |
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| Q |
114 |
gtgaagattgaaaggtgaaattgtggcgtggaaaatgtggaagtgaattaatggagaagaaggattggtggatcacattcacattcacggggcaaaagca |
213 |
Q |
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| T |
38147027 |
gtgaagattgaaaggtgaaattgtggcgtggaaaatgtggaagtgaattaatggagaagaaagattggtggatcacattcacattcacggggcaaaagca |
38146928 |
T |
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| Q |
214 |
aaacaacaccatttggc |
230 |
Q |
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| T |
38146927 |
aaacaacaccatttggc |
38146911 |
T |
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