View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19747_high_5 (Length: 440)

Name: NF19747_high_5
Description: NF19747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19747_high_5
NF19747_high_5
[»] chr1 (4 HSPs)
chr1 (83-418)||(17302276-17302609)
chr1 (240-392)||(15504202-15504354)
chr1 (19-87)||(17302649-17302717)
chr1 (240-387)||(2260079-2260226)
[»] chr4 (6 HSPs)
chr4 (240-392)||(11345996-11346148)
chr4 (242-386)||(47491998-47492142)
chr4 (255-386)||(51305258-51305388)
chr4 (243-387)||(34113279-34113423)
chr4 (279-364)||(43901842-43901926)
chr4 (92-120)||(13807592-13807620)
[»] chr7 (2 HSPs)
chr7 (307-394)||(44701546-44701633)
chr7 (300-386)||(19562115-19562202)
[»] chr6 (1 HSPs)
chr6 (244-385)||(6725944-6726085)
[»] chr5 (2 HSPs)
chr5 (240-387)||(11429783-11429933)
chr5 (335-393)||(3003711-3003769)
[»] chr8 (1 HSPs)
chr8 (300-394)||(10517595-10517689)


Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 83 - 418
Target Start/End: Complemental strand, 17302609 - 17302276
Alignment:
Q  83 atacagatgcttattggatgtcgatgtaaaactattttacactgtcgctgcgtcatacaataataaactaagtctagttgcgaattaaaactatttctag 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  17302609 atacagatgcttattggatgtcgatgtaaaactattttacactgtcgctgcgtcatacaataataaactaagtctagttgcgaattaaa-ctatttctag 17302511  T
Q  183 agatcaaactcgaataccaatcgagttcgtaggagggtattaacacttgcgtccaaattagtgctcgtttggtttagtggtggtttatgtagaatcacgg 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |    
T  17302510 agatcaaactcgaataccaatcgagttcgtaggagggtattaacacttgcgtccaaattagtgctcgtttggtttagcggtggtttctgtagaatcacag 17302411  T
Q  283 tgaattttcacgtttacacaaaagcttgcttttgtagctttagaatttccacgtccagcttgccccgggatgtgatatttgcattgcaaaagctaatcca 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  17302410 tgaattttcacgtttacacaaaagcttgcttttgtagctttagaatttccacgtcaagcttgccccgggatgtgatatttgcattgcaaaagctaatcca 17302311  T
Q  383 aacacgtactaaagaaatgtgacattgggactataa 418  Q
    |||||||||| |||||||||||||||||||||||||    
T  17302310 aacacgtact-aagaaatgtgacattgggactataa 17302276  T

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Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 240 - 392
Target Start/End: Complemental strand, 15504354 - 15504202
Alignment:
Q  240 ttagtgctcgtttggtttagtggtggtttatgtagaatcacggtgaattttcacgtttacacaaaagcttgcttttgtagctttagaatttccacgtcca 339  Q
    |||||||||||||||||||| |||||||  |  | |||||||||| |||||||||||| ||||||||||| |||||||||||| || |||||||||||||    
T  15504354 ttagtgctcgtttggtttagcggtggttactagaaaatcacggtggattttcacgttttcacaaaagcttacttttgtagcttcaggatttccacgtcca 15504255  T
Q  340 gcttgccccgggatgtgatatttgcattgcaaaagctaatccaaacacgtact 392  Q
    |||| || ||  | |||||||||||| || |||||||||||||||||| ||||    
T  15504254 gcttacctcgaaacgtgatatttgcactgtaaaagctaatccaaacacatact 15504202  T

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Target: chr1; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 17302717 - 17302649
Alignment:
Q  19 aattcggggtatatattgattaattttgagtttattaggcatgcactgacagtgtaaactagttataca 87  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17302717 aattcggggtatatattgattaattttgagtttattaggcatgcactgacagtgtaaactagttataca 17302649  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 387
Target Start/End: Original strand, 2260079 - 2260226
Alignment:
Q  240 ttagtgctcgtttggtttagtggtggtttatgtagaatcacggtgaattttcacgtttacacaaaagcttgcttttgtagctttagaatttccacgtcca 339  Q
    |||||||| ||||||||||  |||||||| |  ||||| |||||| ||||| | |||| || ||||| ||| ||||||||||| |  |||| ||||||||    
T  2260079 ttagtgctggtttggtttatcggtggtttctagagaattacggtggatttttatgttttcataaaagtttgtttttgtagcttcaagattttcacgtcca 2260178  T
Q  340 gcttgccccgggatgtgatatttgcattgcaaaagctaatccaaacac 387  Q
     ||| || ||| | ||||| ||||| |||||||||||||  |||||||    
T  2260179 acttacctcggaacgtgatctttgcgttgcaaaagctaactcaaacac 2260226  T

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Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 240 - 392
Target Start/End: Original strand, 11345996 - 11346148
Alignment:
Q  240 ttagtgctcgtttggtttagtggtggtttatgtagaatcacggtgaattttcacgtttacacaaaagcttgcttttgtagctttagaatttccacgtcca 339  Q
    |||||| ||||||||||| | |||||||| | || ||||||||| | ||| || ||||  |||||| |||||||||||||||| || |||| |||||| |    
T  11345996 ttagtgttcgtttggtttggcggtggtttttataaaatcacggtaagtttccatgtttctacaaaaccttgcttttgtagcttcaggattttcacgtcta 11346095  T
Q  340 gcttgccccgggatgtgatatttgcattgcaaaagctaatccaaacacgtact 392  Q
    ||||||| ||| |  |||||||||  |||||||||||||||||||||| ||||    
T  11346096 gcttgcctcggaacatgatatttgtcttgcaaaagctaatccaaacacatact 11346148  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 242 - 386
Target Start/End: Complemental strand, 47492142 - 47491998
Alignment:
Q  242 agtgctcgtttggtttagtggtggtttatgtagaatcacggtgaattttcacgtttacacaaaagcttgcttttgtagctttagaatttccacgtccagc 341  Q
    |||||| ||||||||||  |||||||| |  ||||| |||||| |||||||||||| ||||||| ||| |||||||| ||| || ||||||| |||||||    
T  47492142 agtgcttgtttggtttaacggtggtttttaaagaattacggtggattttcacgttttcacaaaatcttacttttgtaacttcaggatttccatgtccagc 47492043  T
Q  342 ttgccccgggatgtgatatttgcattgcaaaagctaatccaaaca 386  Q
    ||||| |  || |||||||||||  |||||||| |||||||||||    
T  47492042 ttgcctctagacgtgatatttgccctgcaaaagttaatccaaaca 47491998  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 255 - 386
Target Start/End: Original strand, 51305258 - 51305388
Alignment:
Q  255 tttagtggtggtttatgtagaatcacggtgaattttcacgtttacacaaaagcttgcttttgtagctttagaatttccacgtccagcttgccccgggatg 354  Q
    ||||| |||||||| |  |||||||||||||||||||| |||| ||||||| |||| |||| ||| || ||||||| ||| |||| |||||| ||||| |    
T  51305258 tttagcggtggttttttaagaatcacggtgaattttcatgttttcacaaaaacttgttttt-tagtttgagaattttcacatccaacttgcctcgggacg 51305356  T
Q  355 tgatatttgcattgcaaaagctaatccaaaca 386  Q
    |||||||| || ||||||||||||||||||||    
T  51305357 tgatattttcactgcaaaagctaatccaaaca 51305388  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 243 - 387
Target Start/End: Complemental strand, 34113423 - 34113279
Alignment:
Q  243 gtgctcgtttggtttagtggtggtttatgtagaatcacggtgaattttcacgtttacacaaaagcttgcttttgtagctttagaatttccacgtccagct 342  Q
    |||||||||||||||||   |||||| |  |||||||||||| |||||||||||| |||||||| || |||||||| ||| |  ||||| || ||||| |    
T  34113423 gtgctcgtttggtttagcaatggtttctagagaatcacggtggattttcacgttttcacaaaagtttacttttgtaccttcaagatttctacatccagtt 34113324  T
Q  343 tgccccgggatgtgatatttgcattgcaaaagctaatccaaacac 387  Q
    |  | ||||| |||||||| ||| ||||||||||||| |||||||    
T  34113323 tatctcgggacgtgatattcgcaatgcaaaagctaattcaaacac 34113279  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 279 - 364
Target Start/End: Complemental strand, 43901926 - 43901842
Alignment:
Q  279 acggtgaattttcacgtttacacaaaagcttgcttttgtagctttagaatttccacgtccagcttgccccgggatgtgatatttgc 364  Q
    |||||| |||||||||||| ||||||||||||| |||||||||| || |||||||| |||| |||| |  |||| |||||||||||    
T  43901926 acggtggattttcacgttttcacaaaagcttgc-tttgtagcttcaggatttccacatccaacttgacttgggacgtgatatttgc 43901842  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 120
Target Start/End: Complemental strand, 13807620 - 13807592
Alignment:
Q  92 cttattggatgtcgatgtaaaactatttt 120  Q
    |||||||||||||||||||||||||||||    
T  13807620 cttattggatgtcgatgtaaaactatttt 13807592  T

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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 307 - 394
Target Start/End: Original strand, 44701546 - 44701633
Alignment:
Q  307 cttgcttttgtagctttagaatttccacgtccagcttgccccgggatgtgatatttgcattgcaaaagctaatccaaacacgtactaa 394  Q
    ||||||||||||  ||||| |||||||||||||||||  | ||||| ||||||||| || ||||||||||||||||||||||||||||    
T  44701546 cttgcttttgtacttttaggatttccacgtccagcttaactcgggacgtgatatttacactgcaaaagctaatccaaacacgtactaa 44701633  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 386
Target Start/End: Original strand, 19562115 - 19562202
Alignment:
Q  300 acaaaagcttgctttt-gtagctttagaatttccacgtccagcttgccccgggatgtgatatttgcattgcaaaagctaatccaaaca 386  Q
    |||||||||| ||||| |||||||||| |||| || ||| | |||| | |||||  ||||||||||  ||||||||||||||||||||    
T  19562115 acaaaagcttactttttgtagctttaggattttcaggtctaacttgtctcgggacatgatatttgccatgcaaaagctaatccaaaca 19562202  T

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Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 244 - 385
Target Start/End: Original strand, 6725944 - 6726085
Alignment:
Q  244 tgctcgtttggtttagtggtggtttatgtagaatcacggtgaattttcacgtttacacaaaagcttgcttttgtagctttagaatttccacgtccagctt 343  Q
    |||| ||||| ||||| |||||||| | |||||||| |||| |||||||||||| ||||||| ||||| ||| || ||  || ||||||| ||||  |||    
T  6725944 tgctggtttgatttagcggtggtttctatagaatcatggtggattttcacgttttcacaaaaacttgcgtttataactccaggatttccaagtcctactt 6726043  T
Q  344 gccccgggatgtgatatttgcattgcaaaagctaatccaaac 385  Q
    ||| |||||||||| |||| |  |||||||||||||||||||    
T  6726044 gcctcgggatgtgagatttacggtgcaaaagctaatccaaac 6726085  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 240 - 387
Target Start/End: Complemental strand, 11429933 - 11429783
Alignment:
Q  240 ttagtgctcgtttggtttagtggtggtttatgtagaatcacggtgaattttcacgtttacacaaaagcttgc----ttttgtagctttagaatttccacg 335  Q
    |||||||| ||||||||||||||||| || |  ||||||| | |  |||||||||||| ||||||| |||||    ||||||| ||| || ||| |||||    
T  11429933 ttagtgcttgtttggtttagtggtggattctagagaatcatgatagattttcacgttttcacaaaaacttgcgaacttttgtaacttcaggatt-ccacg 11429835  T
Q  336 tccagcttgccccgggatgtgatatttgcattgcaaaagctaatccaaacac 387  Q
    |||| |||||| ||||| ||||||||| ||  |||||||||| |||||||||    
T  11429834 tccaacttgcctcgggacgtgatatttacaccgcaaaagctattccaaacac 11429783  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 393
Target Start/End: Original strand, 3003711 - 3003769
Alignment:
Q  335 gtccagcttgccccgggatgtgatatttgcattgcaaaagctaatccaaacacgtacta 393  Q
    |||||||||||| ||||| |||| |||| || ||||||||||||||||||||| |||||    
T  3003711 gtccagcttgcctcgggacgtgaaatttccagtgcaaaagctaatccaaacacatacta 3003769  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 394
Target Start/End: Complemental strand, 10517689 - 10517595
Alignment:
Q  300 acaaaagcttgcttttgtagctttagaatttccacgtccagcttgccccgggatgtgatatttgcattgcaaaagctaatccaaacacgtactaa 394  Q
    ||||||| || |||||||||||| |  ||||  || || ||||| || | ||||||||||||||| |||| |||| |||||||||||| ||||||    
T  10517689 acaaaagtttacttttgtagcttcaagatttttacatctagcttacctcaggatgtgatatttgccttgcgaaagttaatccaaacacatactaa 10517595  T

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